Genome Details
Selected Rep_genome_ID: Rep_614
Total Genomes Found: 10
Total Genomes Found: 10
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes shahii
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| A95.bin_1 | 3,711,115 | 100% | 0% | China(Inner Mongolia) | Asia | IMGG |
| BF223_48 | 3,248,537 | 100% | 0% | NA | Africa | H3AfricaPhase2 |
| CGMR000396 | 3,070,732 | 100% | 0% | China | Asia | CGMR |
| GCA_021629265.1_ASM2162926v1_genomic | 2,603,696 | 90.34% | 2.02% | NA | Africa | H3AfricaPhase1 |
| Rep_614 | 3,269,507 | 100% | 0% | NA | NA | WIS |
| SPMP106_bin.72 | 2,962,642 | 97.12% | 0% | Singapore | Asia | SPMP |
| SPMP28_bin.82 | 2,775,082 | 96.96% | 0% | Singapore | Asia | SPMP |
| SPMP45_bin.15 | 2,897,047 | 93.4% | 0.48% | Singapore | Asia | SPMP |
| SPMP52_bin.13 | 2,707,868 | 90.61% | 0.48% | Singapore | Asia | SPMP |
| SPMP81_bin.68 | 2,801,968 | 94.87% | 0.96% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_614_CGC29 | CGCFAM_00016 | Yes | 5 | 2 | host glycan |
| Rep_614_CGC7 | CGCFAM_00368 | Yes | 6 | 2 | |
| Rep_614_CGC22 | CGCFAM_00475 | Yes | 17 | 2 | |
| Rep_614_CGC19 | CGCFAM_00921 | Yes | 10 | 1 | |
| Rep_614_CGC17 | CGCFAM_01434 | Yes | 5 | 2 | |
| Rep_614_CGC3 | CGCFAM_01734 | Yes | 3 | 1 | |
| Rep_614_CGC21 | CGCFAM_02860 | Yes | 9 | 1 | |
| Rep_614_CGC20 | CGCFAM_03398 | Yes | 30 | 14 | |
| Rep_614_CGC4 | CGCFAM_03767 | Yes | 6 | 2 |
Top CAZyme Families