Cluster: Rep_614_CGC22
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_614
- CGC Family ID: CGCFAM_00475
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1351 | 1689783 | 1690898 | - | GT9 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1352 | 1690882 | 1691487 | - | DUF4254 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1353 | 1691564 | 1692568 | + | GH73 |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_1354 | 1692581 | 1693267 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_614_c_1 | Rep_614_c_1_1355 | 1693456 | 1695591 | + | 8.A.51.1.1 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1356 | 1695588 | 1696061 | + | DNA_binding_1 | Methyltransf_1N |
| TC | Rep_614_c_1 | Rep_614_c_1_1357 | 1696158 | 1697585 | - | 3.D.1.2.1 |
| TC | Rep_614_c_1 | Rep_614_c_1_1358 | 1697592 | 1699076 | - | 3.D.1.5.1 |
| TC | Rep_614_c_1 | Rep_614_c_1_1359 | 1699089 | 1700981 | - | 3.D.9.1.1 |
| TC | Rep_614_c_1 | Rep_614_c_1_1360 | 1701004 | 1701312 | - | 3.D.1.2.1 |
| TC | Rep_614_c_1 | Rep_614_c_1_1361 | 1701324 | 1701833 | - | 3.D.9.1.1 |
| STP | Rep_614_c_1 | Rep_614_c_1_1362 | 1701837 | 1702277 | - | Fer4 | Fer4 |
| TC | Rep_614_c_1 | Rep_614_c_1_1363 | 1702280 | 1703356 | - | 3.D.1.5.1 |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_1364 | 1703377 | 1703535 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_614_c_1 | Rep_614_c_1_1365 | 1703546 | 1705159 | - | 3.D.1.5.1 |
| TC | Rep_614_c_1 | Rep_614_c_1_1366 | 1705156 | 1705782 | - | 3.D.1.3.1 |
| TC | Rep_614_c_1 | Rep_614_c_1_1367 | 1705803 | 1706153 | - | 3.D.1.8.1 |
Gene ID: Rep_614_c_1_1351
Type: CAZyme
Location: 1689783 - 1690898 (-)
Type: CAZyme
Location: 1689783 - 1690898 (-)
Gene ID: Rep_614_c_1_1352
Type: pfam
Location: 1690882 - 1691487 (-)
Type: pfam
Location: 1690882 - 1691487 (-)
Gene ID: Rep_614_c_1_1353
Type: CAZyme
Location: 1691564 - 1692568 (+)
Type: CAZyme
Location: 1691564 - 1692568 (+)
Gene ID: Rep_614_c_1_1354
Type:
Location: 1692581 - 1693267 (+)
Type:
Location: 1692581 - 1693267 (+)
Gene ID: Rep_614_c_1_1355
Type: TC
Location: 1693456 - 1695591 (+)
Type: TC
Location: 1693456 - 1695591 (+)
Gene ID: Rep_614_c_1_1356
Type: pfam
Location: 1695588 - 1696061 (+)
Type: pfam
Location: 1695588 - 1696061 (+)
Gene ID: Rep_614_c_1_1357
Type: TC
Location: 1696158 - 1697585 (-)
Type: TC
Location: 1696158 - 1697585 (-)
Gene ID: Rep_614_c_1_1358
Type: TC
Location: 1697592 - 1699076 (-)
Type: TC
Location: 1697592 - 1699076 (-)
Gene ID: Rep_614_c_1_1359
Type: TC
Location: 1699089 - 1700981 (-)
Type: TC
Location: 1699089 - 1700981 (-)
Gene ID: Rep_614_c_1_1360
Type: TC
Location: 1701004 - 1701312 (-)
Type: TC
Location: 1701004 - 1701312 (-)
Gene ID: Rep_614_c_1_1361
Type: TC
Location: 1701324 - 1701833 (-)
Type: TC
Location: 1701324 - 1701833 (-)
Gene ID: Rep_614_c_1_1362
Type: STP
Location: 1701837 - 1702277 (-)
Type: STP
Location: 1701837 - 1702277 (-)
Gene ID: Rep_614_c_1_1363
Type: TC
Location: 1702280 - 1703356 (-)
Type: TC
Location: 1702280 - 1703356 (-)
Gene ID: Rep_614_c_1_1364
Type:
Location: 1703377 - 1703535 (-)
Type:
Location: 1703377 - 1703535 (-)
Gene ID: Rep_614_c_1_1365
Type: TC
Location: 1703546 - 1705159 (-)
Type: TC
Location: 1703546 - 1705159 (-)
Gene ID: Rep_614_c_1_1366
Type: TC
Location: 1705156 - 1705782 (-)
Type: TC
Location: 1705156 - 1705782 (-)
Gene ID: Rep_614_c_1_1367
Type: TC
Location: 1705803 - 1706153 (-)
Type: TC
Location: 1705803 - 1706153 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes shahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.