Cluster: Rep_614_CGC19
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_614
- CGC Family ID: CGCFAM_00921
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_614_c_1 | Rep_614_c_1_949 | 1160744 | 1162747 | + | 2.A.16.2.2 |
| pfam | Rep_614_c_1 | Rep_614_c_1_950 | 1162807 | 1163415 | + | DNA_pol_A_exo1 |
| pfam | Rep_614_c_1 | Rep_614_c_1_951 | 1163412 | 1164611 | + | Cons_hypoth95 | MTS | Methyltrans_SAM | PUA_3 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_952 | 1164726 | 1165571 | + | CE1 |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_953 | 1165613 | 1166467 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_954 | 1166730 | 1167584 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_614_c_1 | Rep_614_c_1_955 | 1167679 | 1169625 | - | 2.A.9.3.1 |
| STP | Rep_614_c_1 | Rep_614_c_1_956 | 1169661 | 1171280 | - | CbiA |
| pfam | Rep_614_c_1 | Rep_614_c_1_957 | 1171429 | 1173657 | - | DUF349 | DUF349 | DUF349 | DUF349 | DUF349 |
| TC | Rep_614_c_1 | Rep_614_c_1_958 | 1173838 | 1175850 | - | 3.A.18.1.1 |
Gene ID: Rep_614_c_1_949
Type: TC
Location: 1160744 - 1162747 (+)
Type: TC
Location: 1160744 - 1162747 (+)
Gene ID: Rep_614_c_1_950
Type: pfam
Location: 1162807 - 1163415 (+)
Type: pfam
Location: 1162807 - 1163415 (+)
Gene ID: Rep_614_c_1_951
Type: pfam
Location: 1163412 - 1164611 (+)
Type: pfam
Location: 1163412 - 1164611 (+)
Gene ID: Rep_614_c_1_952
Type: CAZyme
Location: 1164726 - 1165571 (+)
Type: CAZyme
Location: 1164726 - 1165571 (+)
Gene ID: Rep_614_c_1_953
Type:
Location: 1165613 - 1166467 (-)
Type:
Location: 1165613 - 1166467 (-)
Gene ID: Rep_614_c_1_954
Type:
Location: 1166730 - 1167584 (-)
Type:
Location: 1166730 - 1167584 (-)
Gene ID: Rep_614_c_1_955
Type: TC
Location: 1167679 - 1169625 (-)
Type: TC
Location: 1167679 - 1169625 (-)
Gene ID: Rep_614_c_1_956
Type: STP
Location: 1169661 - 1171280 (-)
Type: STP
Location: 1169661 - 1171280 (-)
Gene ID: Rep_614_c_1_957
Type: pfam
Location: 1171429 - 1173657 (-)
Type: pfam
Location: 1171429 - 1173657 (-)
Gene ID: Rep_614_c_1_958
Type: TC
Location: 1173838 - 1175850 (-)
Type: TC
Location: 1173838 - 1175850 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes shahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_614_c_1_953 | vegan > omnivore | 1.35084 | 0.00863 |