Cluster: Rep_614_CGC21
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_614
- CGC Family ID: CGCFAM_02860
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_614_c_1 | Rep_614_c_1_1320 | 1647215 | 1648672 | + | 2.A.3.7.1 |
| TC | Rep_614_c_1 | Rep_614_c_1_1321 | 1648669 | 1651026 | - | 1.B.14.6.5 |
| TC | Rep_614_c_1 | Rep_614_c_1_1322 | 1651068 | 1651946 | - | 2.A.28.1.8 |
| TF | Rep_614_c_1 | Rep_614_c_1_1323 | 1652098 | 1652694 | + | GerE |
| STP | Rep_614_c_1 | Rep_614_c_1_1324 | 1652810 | 1653775 | + | FecR |
| TC | Rep_614_c_1 | Rep_614_c_1_1325 | 1653883 | 1657140 | + | 1.B.14.6.1 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1326 | 1657160 | 1659028 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1327 | 1659050 | 1660372 | + | F5_F8_type_C | BT_3987-like_N | BT_3987-like_N | F5_F8_type_C_2 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1328 | 1660399 | 1662018 | + | GH27 |
Gene ID: Rep_614_c_1_1320
Type: TC
Location: 1647215 - 1648672 (+)
Type: TC
Location: 1647215 - 1648672 (+)
Gene ID: Rep_614_c_1_1321
Type: TC
Location: 1648669 - 1651026 (-)
Type: TC
Location: 1648669 - 1651026 (-)
Gene ID: Rep_614_c_1_1322
Type: TC
Location: 1651068 - 1651946 (-)
Type: TC
Location: 1651068 - 1651946 (-)
Gene ID: Rep_614_c_1_1323
Type: TF
Location: 1652098 - 1652694 (+)
Type: TF
Location: 1652098 - 1652694 (+)
Gene ID: Rep_614_c_1_1324
Type: STP
Location: 1652810 - 1653775 (+)
Type: STP
Location: 1652810 - 1653775 (+)
Gene ID: Rep_614_c_1_1325
Type: TC
Location: 1653883 - 1657140 (+)
Type: TC
Location: 1653883 - 1657140 (+)
Gene ID: Rep_614_c_1_1326
Type: pfam
Location: 1657160 - 1659028 (+)
Type: pfam
Location: 1657160 - 1659028 (+)
Gene ID: Rep_614_c_1_1327
Type: pfam
Location: 1659050 - 1660372 (+)
Type: pfam
Location: 1659050 - 1660372 (+)
Gene ID: Rep_614_c_1_1328
Type: CAZyme
Location: 1660399 - 1662018 (+)
Type: CAZyme
Location: 1660399 - 1662018 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes shahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.