Cluster: Rep_614_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_614
- CGC Family ID: CGCFAM_00368
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_614_c_1 | Rep_614_c_1_107 | 138910 | 139641 | - | 9.B.158.1.1 |
| pfam | Rep_614_c_1 | Rep_614_c_1_108 | 139649 | 142261 | - | Transglut_core |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_109 | 142267 | 143574 | - | GH29 |
| peptidase | Rep_614_c_1 | Rep_614_c_1_110 | 143631 | 144341 | + | S08.UPA |
| pfam | Rep_614_c_1 | Rep_614_c_1_111 | 144361 | 144825 | + | Lipocalin_4 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_112 | 145836 | 147134 | - | GH2 |
Gene ID: Rep_614_c_1_107
Type: TC
Location: 138910 - 139641 (-)
Type: TC
Location: 138910 - 139641 (-)
Gene ID: Rep_614_c_1_108
Type: pfam
Location: 139649 - 142261 (-)
Type: pfam
Location: 139649 - 142261 (-)
Gene ID: Rep_614_c_1_109
Type: CAZyme
Location: 142267 - 143574 (-)
Type: CAZyme
Location: 142267 - 143574 (-)
Gene ID: Rep_614_c_1_110
Type: peptidase
Location: 143631 - 144341 (+)
Type: peptidase
Location: 143631 - 144341 (+)
Gene ID: Rep_614_c_1_111
Type: pfam
Location: 144361 - 144825 (+)
Type: pfam
Location: 144361 - 144825 (+)
Gene ID: Rep_614_c_1_112
Type: CAZyme
Location: 145836 - 147134 (-)
Type: CAZyme
Location: 145836 - 147134 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes shahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.