Cluster: Rep_614_CGC20
🧬 Cluster Details
- Gene Count: 30
- CAZyme Count: 14
- Substrate:
- Genome ID: Rep_614
- CGC Family ID: CGCFAM_03398
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_614_c_1 | Rep_614_c_1_989 | 1222310 | 1224181 | - | GH20 |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_990 | 1224239 | 1225744 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_991 | 1225895 | 1227331 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_992 | 1227397 | 1229670 | - | GH28 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_993 | 1229680 | 1231170 | - | GH28 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_994 | 1231173 | 1232906 | - | GH5_38 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_995 | 1232936 | 1233808 | - | CBM32 |
| TC | Rep_614_c_1 | Rep_614_c_1_996 | 1233838 | 1235688 | - | 8.A.46.1.3 |
| TC | Rep_614_c_1 | Rep_614_c_1_997 | 1235711 | 1238827 | - | 1.B.14.6.1 |
| pfam | Rep_614_c_1 | Rep_614_c_1_998 | 1238964 | 1239977 | + | Metallophos |
| pfam | Rep_614_c_1 | Rep_614_c_1_999 | 1240037 | 1240873 | - | Exo_endo_phos |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1000 | 1240882 | 1242876 | - | GH65 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1001 | 1242881 | 1244896 | - | GH97 |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_1002 | 1244946 | 1246055 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1003 | 1246088 | 1247674 | - | GH20 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1004 | 1247697 | 1249994 | - | GH3 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1005 | 1250020 | 1252350 | - | GH3 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1006 | 1252361 | 1254208 | - | GH20 |
| TF | Rep_614_c_1 | Rep_614_c_1_1007 | 1254346 | 1258479 | - | HTH_AraC |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1008 | 1258797 | 1261031 | + | GH3 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1009 | 1261044 | 1262981 | + | GH127 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1010 | 1263002 | 1264723 | + | GH123 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1011 | 1265258 | 1265710 | + | DUF3408 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1012 | 1265881 | 1267152 | - | Phage_integrase | Phage_int_SAM_5 | Arm-DNA-bind_5 |
| TC | Rep_614_c_1 | Rep_614_c_1_1013 | 1267478 | 1268056 | - | 3.D.6.1.2 |
| TC | Rep_614_c_1 | Rep_614_c_1_1014 | 1268059 | 1268643 | - | 3.D.6.1.2 |
| TC | Rep_614_c_1 | Rep_614_c_1_1015 | 1268636 | 1269298 | - | 3.D.6.1.3 |
| TC | Rep_614_c_1 | Rep_614_c_1_1016 | 1269313 | 1270341 | - | 3.D.6.1.2 |
| TC | Rep_614_c_1 | Rep_614_c_1_1017 | 1270361 | 1271692 | - | 3.D.6.1.2 |
| TC | Rep_614_c_1 | Rep_614_c_1_1018 | 1271906 | 1272805 | - | 3.D.6.1.2 |
Gene ID: Rep_614_c_1_989
Type: CAZyme
Location: 1222310 - 1224181 (-)
Type: CAZyme
Location: 1222310 - 1224181 (-)
Gene ID: Rep_614_c_1_990
Type:
Location: 1224239 - 1225744 (-)
Type:
Location: 1224239 - 1225744 (-)
Gene ID: Rep_614_c_1_991
Type:
Location: 1225895 - 1227331 (-)
Type:
Location: 1225895 - 1227331 (-)
Gene ID: Rep_614_c_1_992
Type: CAZyme
Location: 1227397 - 1229670 (-)
Type: CAZyme
Location: 1227397 - 1229670 (-)
Gene ID: Rep_614_c_1_993
Type: CAZyme
Location: 1229680 - 1231170 (-)
Type: CAZyme
Location: 1229680 - 1231170 (-)
Gene ID: Rep_614_c_1_994
Type: CAZyme
Location: 1231173 - 1232906 (-)
Type: CAZyme
Location: 1231173 - 1232906 (-)
Gene ID: Rep_614_c_1_995
Type: CAZyme
Location: 1232936 - 1233808 (-)
Type: CAZyme
Location: 1232936 - 1233808 (-)
Gene ID: Rep_614_c_1_996
Type: TC
Location: 1233838 - 1235688 (-)
Type: TC
Location: 1233838 - 1235688 (-)
Gene ID: Rep_614_c_1_997
Type: TC
Location: 1235711 - 1238827 (-)
Type: TC
Location: 1235711 - 1238827 (-)
Gene ID: Rep_614_c_1_998
Type: pfam
Location: 1238964 - 1239977 (+)
Type: pfam
Location: 1238964 - 1239977 (+)
Gene ID: Rep_614_c_1_999
Type: pfam
Location: 1240037 - 1240873 (-)
Type: pfam
Location: 1240037 - 1240873 (-)
Gene ID: Rep_614_c_1_1000
Type: CAZyme
Location: 1240882 - 1242876 (-)
Type: CAZyme
Location: 1240882 - 1242876 (-)
Gene ID: Rep_614_c_1_1001
Type: CAZyme
Location: 1242881 - 1244896 (-)
Type: CAZyme
Location: 1242881 - 1244896 (-)
Gene ID: Rep_614_c_1_1002
Type:
Location: 1244946 - 1246055 (-)
Type:
Location: 1244946 - 1246055 (-)
Gene ID: Rep_614_c_1_1003
Type: CAZyme
Location: 1246088 - 1247674 (-)
Type: CAZyme
Location: 1246088 - 1247674 (-)
Gene ID: Rep_614_c_1_1004
Type: CAZyme
Location: 1247697 - 1249994 (-)
Type: CAZyme
Location: 1247697 - 1249994 (-)
Gene ID: Rep_614_c_1_1005
Type: CAZyme
Location: 1250020 - 1252350 (-)
Type: CAZyme
Location: 1250020 - 1252350 (-)
Gene ID: Rep_614_c_1_1006
Type: CAZyme
Location: 1252361 - 1254208 (-)
Type: CAZyme
Location: 1252361 - 1254208 (-)
Gene ID: Rep_614_c_1_1007
Type: TF
Location: 1254346 - 1258479 (-)
Type: TF
Location: 1254346 - 1258479 (-)
Gene ID: Rep_614_c_1_1008
Type: CAZyme
Location: 1258797 - 1261031 (+)
Type: CAZyme
Location: 1258797 - 1261031 (+)
Gene ID: Rep_614_c_1_1009
Type: CAZyme
Location: 1261044 - 1262981 (+)
Type: CAZyme
Location: 1261044 - 1262981 (+)
Gene ID: Rep_614_c_1_1010
Type: CAZyme
Location: 1263002 - 1264723 (+)
Type: CAZyme
Location: 1263002 - 1264723 (+)
Gene ID: Rep_614_c_1_1011
Type: pfam
Location: 1265258 - 1265710 (+)
Type: pfam
Location: 1265258 - 1265710 (+)
Gene ID: Rep_614_c_1_1012
Type: pfam
Location: 1265881 - 1267152 (-)
Type: pfam
Location: 1265881 - 1267152 (-)
Gene ID: Rep_614_c_1_1013
Type: TC
Location: 1267478 - 1268056 (-)
Type: TC
Location: 1267478 - 1268056 (-)
Gene ID: Rep_614_c_1_1014
Type: TC
Location: 1268059 - 1268643 (-)
Type: TC
Location: 1268059 - 1268643 (-)
Gene ID: Rep_614_c_1_1015
Type: TC
Location: 1268636 - 1269298 (-)
Type: TC
Location: 1268636 - 1269298 (-)
Gene ID: Rep_614_c_1_1016
Type: TC
Location: 1269313 - 1270341 (-)
Type: TC
Location: 1269313 - 1270341 (-)
Gene ID: Rep_614_c_1_1017
Type: TC
Location: 1270361 - 1271692 (-)
Type: TC
Location: 1270361 - 1271692 (-)
Gene ID: Rep_614_c_1_1018
Type: TC
Location: 1271906 - 1272805 (-)
Type: TC
Location: 1271906 - 1272805 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes shahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.