Genome Details
Selected Rep_genome_ID: Rep_523
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900553185
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| Rep_523 | 3,042,473 | 90.8914% | 0.404229% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_523_CGC8 | CGCFAM_00001 | Yes | 4 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| Rep_523_CGC33 | CGCFAM_00025 | Yes | 9 | 4 | pectin/alpha-glucan |
| Rep_523_CGC32 | CGCFAM_00081 | Yes | 12 | 1 | |
| Rep_523_CGC24 | CGCFAM_00082 | Yes | 7 | 4 | beta-mannan |
| Rep_523_CGC22 | CGCFAM_00151 | Yes | 7 | 4 | |
| Rep_523_CGC12 | CGCFAM_00152 | Yes | 6 | 3 | |
| Rep_523_CGC45 | CGCFAM_00200 | Yes | 5 | 1 | |
| Rep_523_CGC18 | CGCFAM_00379 | Yes | 3 | 1 | |
| Rep_523_CGC29 | CGCFAM_00755 | Yes | 5 | 1 | |
| Rep_523_CGC34 | CGCFAM_00940 | Yes | 10 | 6 | |
| Rep_523_CGC41 | CGCFAM_01220 | Yes | 12 | 3 | |
| Rep_523_CGC9 | CGCFAM_01658 | Yes | 3 | 1 | |
| Rep_523_CGC43 | CGCFAM_01804 | Yes | 5 | 3 | xylan |
| Rep_523_CGC46 | CGCFAM_01806 | Yes | 5 | 3 | |
| Rep_523_CGC10 | CGCFAM_01918 | Yes | 6 | 4 | |
| Rep_523_CGC21 | CGCFAM_02717 | Yes | 6 | 3 | |
| Rep_523_CGC19 | CGCFAM_03586 | Yes | 4 | 1 | |
| Rep_523_CGC35 | CGCFAM_04755 | Yes | 8 | 4 | |
| Rep_523_CGC37 | CGCFAM_06252 | Yes | 4 | 1 | |
| Rep_523_CGC2 | CGCFAM_08048 | Yes | 5 | 1 | |
| Rep_523_CGC17 | CGCFAM_10477 | Yes | 4 | 1 | |
| Rep_523_CGC44 | CGCFAM_11053 | Yes | 3 | 1 |
Top CAZyme Families