Genome Details
Selected Rep_genome_ID: Rep_2926
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella stercoris
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR079536 | 2,175,897 | 97.58% | 1.08% | China | Asia | CGMR |
| KY054_15 | 2,168,624 | 100% | 0% | NA | Africa | H3AfricaPhase2 |
| Rep_2926 | 2,147,888 | 100% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_2926_CGC13 | CGCFAM_00002 | Yes | 5 | 3 | |
| Rep_2926_CGC11 | CGCFAM_00003 | Yes | 19 | 8 | |
| Rep_2926_CGC21 | CGCFAM_00020 | Yes | 10 | 4 | host glycan/beta-glucan |
| Rep_2926_CGC12 | CGCFAM_00089 | Yes | 4 | 1 | |
| Rep_2926_CGC16 | CGCFAM_00209 | Yes | 6 | 2 | |
| Rep_2926_CGC8 | CGCFAM_00264 | Yes | 6 | 2 | |
| Rep_2926_CGC5 | CGCFAM_00416 | Yes | 7 | 2 | |
| Rep_2926_CGC7 | CGCFAM_01825 | Yes | 5 | 2 | |
| Rep_2926_CGC4 | CGCFAM_02309 | Yes | 8 | 4 | |
| Rep_2926_CGC17 | CGCFAM_06127 | Yes | 5 | 1 | |
| Rep_2926_CGC15 | CGCFAM_10809 | Yes | 3 | 1 |
Top CAZyme Families