Cluster: Rep_2926_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2926
- CGC Family ID: CGCFAM_00089
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2926_c_19 | Rep_2926_c_19_62 | 79782 | 81251 | + | GH13_20 |
| pfam | Rep_2926_c_19 | Rep_2926_c_19_63 | 81308 | 83824 | - | S1 | Tex_N | HHH_3 | HHH_7 | Tex_YqgF | HHH_9 | Tex_central_region | S1_RRP5 |
| pfam | Rep_2926_c_19 | Rep_2926_c_19_64 | 84102 | 84590 | + | LMWPc |
| TC | Rep_2926_c_19 | Rep_2926_c_19_65 | 84600 | 85316 | + | 9.B.120.1.3 |
Gene ID: Rep_2926_c_19_62
Type: CAZyme
Location: 79782 - 81251 (+)
Type: CAZyme
Location: 79782 - 81251 (+)
Gene ID: Rep_2926_c_19_63
Type: pfam
Location: 81308 - 83824 (-)
Type: pfam
Location: 81308 - 83824 (-)
Gene ID: Rep_2926_c_19_64
Type: pfam
Location: 84102 - 84590 (+)
Type: pfam
Location: 84102 - 84590 (+)
Gene ID: Rep_2926_c_19_65
Type: TC
Location: 84600 - 85316 (+)
Type: TC
Location: 84600 - 85316 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella stercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.