Cluster: Rep_2926_CGC11
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_2926
- CGC Family ID: CGCFAM_00003
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2926_c_18 | Rep_2926_c_18_241 | 274322 | 276025 | - | 8.A.7.1.1 |
| STP | Rep_2926_c_18 | Rep_2926_c_18_242 | 276161 | 276424 | - | PTS-HPr |
| pfam | Rep_2926_c_18 | Rep_2926_c_18_243 | 277275 | 279146 | + | DUF4012 |
| CAZyme | Rep_2926_c_18 | Rep_2926_c_18_244 | 279320 | 280420 | - | GT2 |
| CAZyme | Rep_2926_c_18 | Rep_2926_c_18_245 | 280498 | 282576 | + | GT2 |
| pfam | Rep_2926_c_18 | Rep_2926_c_18_246 | 282716 | 284188 | - | dTDP_sugar_isom | Epimerase | RmlD_sub_bind |
| pfam | Rep_2926_c_18 | Rep_2926_c_18_247 | 284276 | 285298 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | Rep_2926_c_18 | Rep_2926_c_18_248 | 285408 | 286712 | - | GT2 |
| TC | Rep_2926_c_18 | Rep_2926_c_18_249 | 286740 | 287969 | - | 3.A.1.103.5 |
| pfam | Rep_2926_c_18 | Rep_2926_c_18_250 | 287972 | 288814 | - | ABC2_membrane |
| pfam | Rep_2926_c_18 | Rep_2926_c_18_251 | 288848 | 289750 | - | NTP_transferase | NTP_transf_3 |
| CAZyme | Rep_2926_c_18 | Rep_2926_c_18_252 | 289888 | 292293 | - | GT2 | GT2 |
| CAZyme | Rep_2926_c_18 | Rep_2926_c_18_253 | 292324 | 293364 | - | GH73 |
| pfam | Rep_2926_c_18 | Rep_2926_c_18_254 | 293412 | 295064 | - | Amidase_3 | DUF5648 |
| pfam | Rep_2926_c_18 | Rep_2926_c_18_255 | 295222 | 296850 | - | DUF2142 |
| CAZyme | Rep_2926_c_18 | Rep_2926_c_18_256 | 296941 | 297975 | - | GT4 |
| CAZyme | Rep_2926_c_18 | Rep_2926_c_18_257 | 298210 | 298896 | + | GT2 |
| pfam | Rep_2926_c_18 | Rep_2926_c_18_258 | 298899 | 299249 | + | DUF2304 |
| CAZyme | Rep_2926_c_18 | Rep_2926_c_18_259 | 299253 | 300377 | + | GT4 |
Gene ID: Rep_2926_c_18_241
Type: TC
Location: 274322 - 276025 (-)
Type: TC
Location: 274322 - 276025 (-)
Gene ID: Rep_2926_c_18_242
Type: STP
Location: 276161 - 276424 (-)
Type: STP
Location: 276161 - 276424 (-)
Gene ID: Rep_2926_c_18_243
Type: pfam
Location: 277275 - 279146 (+)
Type: pfam
Location: 277275 - 279146 (+)
Gene ID: Rep_2926_c_18_244
Type: CAZyme
Location: 279320 - 280420 (-)
Type: CAZyme
Location: 279320 - 280420 (-)
Gene ID: Rep_2926_c_18_245
Type: CAZyme
Location: 280498 - 282576 (+)
Type: CAZyme
Location: 280498 - 282576 (+)
Gene ID: Rep_2926_c_18_246
Type: pfam
Location: 282716 - 284188 (-)
Type: pfam
Location: 282716 - 284188 (-)
Gene ID: Rep_2926_c_18_247
Type: pfam
Location: 284276 - 285298 (-)
Type: pfam
Location: 284276 - 285298 (-)
Gene ID: Rep_2926_c_18_248
Type: CAZyme
Location: 285408 - 286712 (-)
Type: CAZyme
Location: 285408 - 286712 (-)
Gene ID: Rep_2926_c_18_249
Type: TC
Location: 286740 - 287969 (-)
Type: TC
Location: 286740 - 287969 (-)
Gene ID: Rep_2926_c_18_250
Type: pfam
Location: 287972 - 288814 (-)
Type: pfam
Location: 287972 - 288814 (-)
Gene ID: Rep_2926_c_18_251
Type: pfam
Location: 288848 - 289750 (-)
Type: pfam
Location: 288848 - 289750 (-)
Gene ID: Rep_2926_c_18_252
Type: CAZyme
Location: 289888 - 292293 (-)
Type: CAZyme
Location: 289888 - 292293 (-)
Gene ID: Rep_2926_c_18_253
Type: CAZyme
Location: 292324 - 293364 (-)
Type: CAZyme
Location: 292324 - 293364 (-)
Gene ID: Rep_2926_c_18_254
Type: pfam
Location: 293412 - 295064 (-)
Type: pfam
Location: 293412 - 295064 (-)
Gene ID: Rep_2926_c_18_255
Type: pfam
Location: 295222 - 296850 (-)
Type: pfam
Location: 295222 - 296850 (-)
Gene ID: Rep_2926_c_18_256
Type: CAZyme
Location: 296941 - 297975 (-)
Type: CAZyme
Location: 296941 - 297975 (-)
Gene ID: Rep_2926_c_18_257
Type: CAZyme
Location: 298210 - 298896 (+)
Type: CAZyme
Location: 298210 - 298896 (+)
Gene ID: Rep_2926_c_18_258
Type: pfam
Location: 298899 - 299249 (+)
Type: pfam
Location: 298899 - 299249 (+)
Gene ID: Rep_2926_c_18_259
Type: CAZyme
Location: 299253 - 300377 (+)
Type: CAZyme
Location: 299253 - 300377 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella stercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.