Cluster: Rep_2926_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2926
- CGC Family ID: CGCFAM_00416
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2926_c_7 | Rep_2926_c_7_6 | 4978 | 5976 | - | GT2 |
| NULL(UNKNOWN) | Rep_2926_c_7 | Rep_2926_c_7_7 | 5954 | 7198 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2926_c_7 | Rep_2926_c_7_8 | 7198 | 8289 | - | Epimerase_2 |
| CAZyme | Rep_2926_c_7 | Rep_2926_c_7_9 | 8309 | 9016 | - | GT32 |
| pfam | Rep_2926_c_7 | Rep_2926_c_7_10 | 9021 | 9506 | - | Glycos_transf_1 | Glyco_tran_28_C |
| pfam | Rep_2926_c_7 | Rep_2926_c_7_11 | 9520 | 9987 | - | Alg14 |
| TC | Rep_2926_c_7 | Rep_2926_c_7_12 | 9989 | 10567 | - | 9.B.18.1.2 |
Gene ID: Rep_2926_c_7_6
Type: CAZyme
Location: 4978 - 5976 (-)
Type: CAZyme
Location: 4978 - 5976 (-)
Gene ID: Rep_2926_c_7_7
Type:
Location: 5954 - 7198 (-)
Type:
Location: 5954 - 7198 (-)
Gene ID: Rep_2926_c_7_8
Type: pfam
Location: 7198 - 8289 (-)
Type: pfam
Location: 7198 - 8289 (-)
Gene ID: Rep_2926_c_7_9
Type: CAZyme
Location: 8309 - 9016 (-)
Type: CAZyme
Location: 8309 - 9016 (-)
Gene ID: Rep_2926_c_7_10
Type: pfam
Location: 9021 - 9506 (-)
Type: pfam
Location: 9021 - 9506 (-)
Gene ID: Rep_2926_c_7_11
Type: pfam
Location: 9520 - 9987 (-)
Type: pfam
Location: 9520 - 9987 (-)
Gene ID: Rep_2926_c_7_12
Type: TC
Location: 9989 - 10567 (-)
Type: TC
Location: 9989 - 10567 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella stercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2926_c_7_8 | vegan > omnivore | 1.70852 | 0.02357 |