Genome Details
Selected Rep_genome_ID: MGYG000002082
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes merdavium
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| MGYG000002082 | 2,573,115 | 100% | 0.96% | Netherlands | Europe | UHGG |
| Rep_629 | 2,893,983 | 100% | 1.20192% | NA | NA | WIS |
| SW163_bin.81 | 2,182,279 | 95.62% | 0.96% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| MGYG000002082_CGC22 | CGCFAM_00152 | Yes | 9 | 3 | |
| MGYG000002082_CGC25 | CGCFAM_00439 | Yes | 11 | 5 | host glycan |
| MGYG000002082_CGC26 | CGCFAM_00475 | Yes | 15 | 2 | |
| MGYG000002082_CGC6 | CGCFAM_00507 | Yes | 3 | 2 | |
| MGYG000002082_CGC15 | CGCFAM_00511 | Yes | 5 | 1 | |
| MGYG000002082_CGC14 | CGCFAM_00607 | Yes | 6 | 1 | |
| MGYG000002082_CGC9 | CGCFAM_00632 | Yes | 19 | 3 | |
| MGYG000002082_CGC18 | CGCFAM_00715 | Yes | 5 | 1 | |
| MGYG000002082_CGC21 | CGCFAM_00716 | Yes | 7 | 3 | alginate |
| MGYG000002082_CGC10 | CGCFAM_01567 | Yes | 8 | 4 | |
| MGYG000002082_CGC31 | CGCFAM_01682 | Yes | 8 | 1 | |
| MGYG000002082_CGC19 | CGCFAM_01792 | Yes | 5 | 1 | |
| MGYG000002082_CGC11 | CGCFAM_01913 | Yes | 7 | 1 | |
| MGYG000002082_CGC20 | CGCFAM_02291 | Yes | 18 | 7 | |
| MGYG000002082_CGC7 | CGCFAM_02852 | Yes | 4 | 1 |
Top CAZyme Families