Genome Details
Selected Rep_genome_ID: HRGMv2_4003
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_4003 | 3,241,725 | 97.39% | 0.123% | Tanzania | Africa | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_4003_CGC13 | CGCFAM_00001 | Yes | 5 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| HRGMv2_4003_CGC27 | CGCFAM_00001 | Yes | 3 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| HRGMv2_4003_CGC28 | CGCFAM_00005 | Yes | 6 | 2 | |
| HRGMv2_4003_CGC25 | CGCFAM_00025 | Yes | 6 | 2 | pectin/alpha-glucan |
| HRGMv2_4003_CGC5 | CGCFAM_00147 | Yes | 8 | 3 | |
| HRGMv2_4003_CGC32 | CGCFAM_00300 | Yes | 7 | 2 | |
| HRGMv2_4003_CGC35 | CGCFAM_00344 | Yes | 3 | 2 | |
| HRGMv2_4003_CGC41 | CGCFAM_00798 | Yes | 5 | 1 | |
| HRGMv2_4003_CGC14 | CGCFAM_00997 | Yes | 3 | 1 | |
| HRGMv2_4003_CGC12 | CGCFAM_02370 | Yes | 6 | 4 | |
| HRGMv2_4003_CGC11 | CGCFAM_02658 | Yes | 5 | 3 | |
| HRGMv2_4003_CGC40 | CGCFAM_03166 | Yes | 3 | 1 | |
| HRGMv2_4003_CGC39 | CGCFAM_03190 | Yes | 4 | 3 | |
| HRGMv2_4003_CGC15 | CGCFAM_06261 | Yes | 6 | 2 | |
| HRGMv2_4003_CGC21 | CGCFAM_08365 | Yes | 4 | 1 | |
| HRGMv2_4003_CGC33 | CGCFAM_08679 | Yes | 4 | 1 | |
| HRGMv2_4003_CGC19 | CGCFAM_09714 | Yes | 10 | 1 | |
| HRGMv2_4003_CGC29 | CGCFAM_09715 | Yes | 8 | 2 | |
| HRGMv2_4003_CGC10 | CGCFAM_10517 | Yes | 6 | 3 |
Top CAZyme Families