Cluster: HRGMv2_4003_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4003
- CGC Family ID: CGCFAM_06261
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4003_18 | HRGMv2_4003_18_23 | 31818 | 33704 | - | 1.C.39.4.5 |
| NULL(UNKNOWN) | HRGMv2_4003_18 | HRGMv2_4003_18_24 | 33738 | 34016 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4003_18 | HRGMv2_4003_18_25 | 34681 | 35991 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4003_18 | HRGMv2_4003_18_26 | 36033 | 37541 | + | GT2 |
| pfam | HRGMv2_4003_18 | HRGMv2_4003_18_27 | 37660 | 40641 | + | TPR_16 | TPR_19 | TPR_19 | YaiO |
| CAZyme | HRGMv2_4003_18 | HRGMv2_4003_18_28 | 40616 | 42793 | + | GH163 |
Gene ID: HRGMv2_4003_18_23
Type: TC
Location: 31818 - 33704 (-)
Type: TC
Location: 31818 - 33704 (-)
Gene ID: HRGMv2_4003_18_24
Type:
Location: 33738 - 34016 (-)
Type:
Location: 33738 - 34016 (-)
Gene ID: HRGMv2_4003_18_25
Type:
Location: 34681 - 35991 (+)
Type:
Location: 34681 - 35991 (+)
Gene ID: HRGMv2_4003_18_26
Type: CAZyme
Location: 36033 - 37541 (+)
Type: CAZyme
Location: 36033 - 37541 (+)
Gene ID: HRGMv2_4003_18_27
Type: pfam
Location: 37660 - 40641 (+)
Type: pfam
Location: 37660 - 40641 (+)
Gene ID: HRGMv2_4003_18_28
Type: CAZyme
Location: 40616 - 42793 (+)
Type: CAZyme
Location: 40616 - 42793 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.