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Cluster: HRGMv2_4003_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4003_31 HRGMv2_4003_31_5 2949 3134 + 2.A.64.1.3
TC HRGMv2_4003_31 HRGMv2_4003_31_6 3184 4035 + 2.A.64.1.3
pfam HRGMv2_4003_31 HRGMv2_4003_31_7 4200 4988 - Hexapep | Hexapep | Acetyltransf_11
TC HRGMv2_4003_31 HRGMv2_4003_31_8 5022 6440 - 2.A.6.2.42
TC HRGMv2_4003_31 HRGMv2_4003_31_9 6521 9940 - 2.A.6.2.22
TC HRGMv2_4003_31 HRGMv2_4003_31_10 10040 11206 - 8.A.1.6.3
pfam HRGMv2_4003_31 HRGMv2_4003_31_11 12613 13650 + DNA_methylase
NULL(UNKNOWN) HRGMv2_4003_31 HRGMv2_4003_31_12 13957 14928 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4003_31 HRGMv2_4003_31_13 14946 17045 + GH20
TC HRGMv2_4003_31 HRGMv2_4003_31_14 17189 19594 + 8.A.3.3.2
Gene ID: HRGMv2_4003_31_5
Type: TC
Location: 2949 - 3134 (+)
Gene ID: HRGMv2_4003_31_6
Type: TC
Location: 3184 - 4035 (+)
Gene ID: HRGMv2_4003_31_7
Type: pfam
Location: 4200 - 4988 (-)
Gene ID: HRGMv2_4003_31_8
Type: TC
Location: 5022 - 6440 (-)
Gene ID: HRGMv2_4003_31_9
Type: TC
Location: 6521 - 9940 (-)
Gene ID: HRGMv2_4003_31_10
Type: TC
Location: 10040 - 11206 (-)
Gene ID: HRGMv2_4003_31_11
Type: pfam
Location: 12613 - 13650 (+)
Gene ID: HRGMv2_4003_31_12
Type:
Location: 13957 - 14928 (+)
Gene ID: HRGMv2_4003_31_13
Type: CAZyme
Location: 14946 - 17045 (+)
Gene ID: HRGMv2_4003_31_14
Type: TC
Location: 17189 - 19594 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Alloprevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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