Cluster: HRGMv2_4003_CGC32
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4003
- CGC Family ID: CGCFAM_00300
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4003_58 | HRGMv2_4003_58_12 | 10909 | 12657 | + | GT83 |
| NULL(UNKNOWN) | HRGMv2_4003_58 | HRGMv2_4003_58_13 | 12585 | 12884 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4003_58 | HRGMv2_4003_58_14 | 13390 | 14328 | - | GT2 |
| pfam | HRGMv2_4003_58 | HRGMv2_4003_58_15 | 14410 | 14829 | - | GtrA_DPMS_TM |
| NULL(UNKNOWN) | HRGMv2_4003_58 | HRGMv2_4003_58_16 | 15212 | 15415 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4003_58 | HRGMv2_4003_58_17 | 15405 | 18005 | + | 3.A.9.1.2 |
| TC | HRGMv2_4003_58 | HRGMv2_4003_58_18 | 18540 | 20012 | - | 2.A.21.9.1 |
Gene ID: HRGMv2_4003_58_12
Type: CAZyme
Location: 10909 - 12657 (+)
Type: CAZyme
Location: 10909 - 12657 (+)
Gene ID: HRGMv2_4003_58_13
Type:
Location: 12585 - 12884 (-)
Type:
Location: 12585 - 12884 (-)
Gene ID: HRGMv2_4003_58_14
Type: CAZyme
Location: 13390 - 14328 (-)
Type: CAZyme
Location: 13390 - 14328 (-)
Gene ID: HRGMv2_4003_58_15
Type: pfam
Location: 14410 - 14829 (-)
Type: pfam
Location: 14410 - 14829 (-)
Gene ID: HRGMv2_4003_58_16
Type:
Location: 15212 - 15415 (+)
Type:
Location: 15212 - 15415 (+)
Gene ID: HRGMv2_4003_58_17
Type: TC
Location: 15405 - 18005 (+)
Type: TC
Location: 15405 - 18005 (+)
Gene ID: HRGMv2_4003_58_18
Type: TC
Location: 18540 - 20012 (-)
Type: TC
Location: 18540 - 20012 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.