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Cluster: HRGMv2_4003_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4003_46 HRGMv2_4003_46_3 2171 5284 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_4003_46 HRGMv2_4003_46_4 5521 5757 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4003_46 HRGMv2_4003_46_5 5883 8033 - GH2
CAZyme HRGMv2_4003_46 HRGMv2_4003_46_6 8272 9720 - GH29
TF HRGMv2_4003_46 HRGMv2_4003_46_7 10037 10321 - HTH_5
NULL(UNKNOWN) HRGMv2_4003_46 HRGMv2_4003_46_8 10324 10977 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4003_46 HRGMv2_4003_46_9 11470 14607 - 2.A.6.2.17
TC HRGMv2_4003_46 HRGMv2_4003_46_10 14642 15679 - 2.A.6.2.4
Gene ID: HRGMv2_4003_46_3
Type: TC
Location: 2171 - 5284 (-)
Gene ID: HRGMv2_4003_46_4
Type:
Location: 5521 - 5757 (-)
Gene ID: HRGMv2_4003_46_5
Type: CAZyme
Location: 5883 - 8033 (-)
Gene ID: HRGMv2_4003_46_6
Type: CAZyme
Location: 8272 - 9720 (-)
Gene ID: HRGMv2_4003_46_7
Type: TF
Location: 10037 - 10321 (-)
Gene ID: HRGMv2_4003_46_8
Type:
Location: 10324 - 10977 (-)
Gene ID: HRGMv2_4003_46_9
Type: TC
Location: 11470 - 14607 (-)
Gene ID: HRGMv2_4003_46_10
Type: TC
Location: 14642 - 15679 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Alloprevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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