Genome Details
Selected Rep_genome_ID: HRGMv2_3130
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Avimicrobium
Species
Avimicrobium caecorum
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| A43.bin_23 | 2,230,287 | 94.63% | 1.34% | China(Inner Mongolia) | Asia | IMGG |
| HRGMv2_3130 | 2,248,755 | 94.63% | 0% | South Korea | Asia | HRGM |
| MGYG000002689 | 2,122,323 | 94.63% | 0% | Canada | North America | UHGG |
| Rep_3106 | 1,946,925 | 93.2886% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_3130_CGC4 | CGCFAM_00172 | Yes | 3 | 1 | |
| HRGMv2_3130_CGC1 | CGCFAM_00270 | Yes | 10 | 1 | |
| HRGMv2_3130_CGC5 | CGCFAM_00324 | Yes | 6 | 1 | |
| HRGMv2_3130_CGC2 | CGCFAM_06120 | Yes | 4 | 1 | |
| HRGMv2_3130_CGC7 | CGCFAM_08306 | Yes | 4 | 1 | |
| HRGMv2_3130_CGC3 | CGCFAM_10304 | Yes | 5 | 1 |
Top CAZyme Families