Cluster: HRGMv2_3130_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3130
- CGC Family ID: CGCFAM_06120
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3130_1 | HRGMv2_3130_1_261 | 279909 | 281267 | + | 2.A.66.1.26 |
| TC | HRGMv2_3130_1 | HRGMv2_3130_1_262 | 281481 | 282839 | + | 2.A.66.1.26 |
| pfam | HRGMv2_3130_1 | HRGMv2_3130_1_263 | 282959 | 283258 | + | DUF3846 |
| CAZyme | HRGMv2_3130_1 | HRGMv2_3130_1_264 | 283259 | 284569 | - | GH18 |
Gene ID: HRGMv2_3130_1_261
Type: TC
Location: 279909 - 281267 (+)
Type: TC
Location: 279909 - 281267 (+)
Gene ID: HRGMv2_3130_1_262
Type: TC
Location: 281481 - 282839 (+)
Type: TC
Location: 281481 - 282839 (+)
Gene ID: HRGMv2_3130_1_263
Type: pfam
Location: 282959 - 283258 (+)
Type: pfam
Location: 282959 - 283258 (+)
Gene ID: HRGMv2_3130_1_264
Type: CAZyme
Location: 283259 - 284569 (-)
Type: CAZyme
Location: 283259 - 284569 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Avimicrobium
Species
Avimicrobium caecorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.