Cluster: HRGMv2_3130_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3130
- CGC Family ID: CGCFAM_10304
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3130_1 | HRGMv2_3130_1_400 | 425551 | 426249 | + | 9.B.120.1.3 |
| TC | HRGMv2_3130_1 | HRGMv2_3130_1_401 | 426451 | 426714 | + | 8.A.8.1.4 |
| STP | HRGMv2_3130_1 | HRGMv2_3130_1_402 | 426870 | 427382 | + | Nitroreductase | Nitroreductase |
| pfam | HRGMv2_3130_1 | HRGMv2_3130_1_403 | 427452 | 428837 | - | Pyr_redox_2 | NAD_binding_8 | FAD-depend_C |
| CAZyme | HRGMv2_3130_1 | HRGMv2_3130_1_404 | 428856 | 430085 | - | GT4 |
Gene ID: HRGMv2_3130_1_400
Type: TC
Location: 425551 - 426249 (+)
Type: TC
Location: 425551 - 426249 (+)
Gene ID: HRGMv2_3130_1_401
Type: TC
Location: 426451 - 426714 (+)
Type: TC
Location: 426451 - 426714 (+)
Gene ID: HRGMv2_3130_1_402
Type: STP
Location: 426870 - 427382 (+)
Type: STP
Location: 426870 - 427382 (+)
Gene ID: HRGMv2_3130_1_403
Type: pfam
Location: 427452 - 428837 (-)
Type: pfam
Location: 427452 - 428837 (-)
Gene ID: HRGMv2_3130_1_404
Type: CAZyme
Location: 428856 - 430085 (-)
Type: CAZyme
Location: 428856 - 430085 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Avimicrobium
Species
Avimicrobium caecorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.