Cluster: HRGMv2_3130_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3130
- CGC Family ID: CGCFAM_00324
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3130_5 | HRGMv2_3130_5_103 | 124599 | 125939 | + | 2.A.66.1.37 |
| NULL(UNKNOWN) | HRGMv2_3130_5 | HRGMv2_3130_5_104 | 126083 | 126979 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3130_5 | HRGMv2_3130_5_105 | 127258 | 129042 | - | 2.A.58.2.2 |
| CAZyme | HRGMv2_3130_5 | HRGMv2_3130_5_106 | 129371 | 130393 | + | CE4 |
| peptidase | HRGMv2_3130_5 | HRGMv2_3130_5_107 | 130477 | 131844 | - | M20.UNW |
| TC | HRGMv2_3130_5 | HRGMv2_3130_5_108 | 132291 | 132866 | + | 2.A.107.1.2 |
Gene ID: HRGMv2_3130_5_103
Type: TC
Location: 124599 - 125939 (+)
Type: TC
Location: 124599 - 125939 (+)
Gene ID: HRGMv2_3130_5_104
Type:
Location: 126083 - 126979 (+)
Type:
Location: 126083 - 126979 (+)
Gene ID: HRGMv2_3130_5_105
Type: TC
Location: 127258 - 129042 (-)
Type: TC
Location: 127258 - 129042 (-)
Gene ID: HRGMv2_3130_5_106
Type: CAZyme
Location: 129371 - 130393 (+)
Type: CAZyme
Location: 129371 - 130393 (+)
Gene ID: HRGMv2_3130_5_107
Type: peptidase
Location: 130477 - 131844 (-)
Type: peptidase
Location: 130477 - 131844 (-)
Gene ID: HRGMv2_3130_5_108
Type: TC
Location: 132291 - 132866 (+)
Type: TC
Location: 132291 - 132866 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Avimicrobium
Species
Avimicrobium caecorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.