Genome Details
Selected Rep_genome_ID: HRGMv2_2521
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Species
Limosilactobacillus caviae
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_2521 | 1,999,303 | 99.45% | 0% | South Korea | Asia | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2521_CGC5 | CGCFAM_00202 | Yes | 3 | 1 | |
| HRGMv2_2521_CGC4 | CGCFAM_00255 | Yes | 7 | 2 | |
| HRGMv2_2521_CGC2 | CGCFAM_00463 | Yes | 10 | 3 | |
| HRGMv2_2521_CGC14 | CGCFAM_00769 | Yes | 5 | 1 | |
| HRGMv2_2521_CGC20 | CGCFAM_01577 | Yes | 6 | 3 | |
| HRGMv2_2521_CGC16 | CGCFAM_03238 | Yes | 6 | 1 | |
| HRGMv2_2521_CGC7 | CGCFAM_03709 | Yes | 13 | 6 | |
| HRGMv2_2521_CGC12 | CGCFAM_04632 | Yes | 4 | 1 | |
| HRGMv2_2521_CGC13 | CGCFAM_07044 | Yes | 9 | 1 | |
| HRGMv2_2521_CGC11 | CGCFAM_07046 | Yes | 9 | 3 | |
| HRGMv2_2521_CGC15 | CGCFAM_07048 | Yes | 20 | 2 | |
| HRGMv2_2521_CGC21 | CGCFAM_10105 | Yes | 3 | 2 |
Top CAZyme Families