Cluster: HRGMv2_2521_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2521
- CGC Family ID: CGCFAM_03709
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2521_3 | HRGMv2_2521_3_33 | 41071 | 42528 | - | GH73 |
| TC | HRGMv2_2521_3 | HRGMv2_2521_3_34 | 42686 | 44140 | - | 1.C.105.2.7 |
| pfam | HRGMv2_2521_3 | HRGMv2_2521_3_35 | 44266 | 45345 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_2521_3 | HRGMv2_2521_3_36 | 45332 | 46390 | - | GT4 |
| TC | HRGMv2_2521_3 | HRGMv2_2521_3_37 | 46390 | 47820 | - | 2.A.66.2.16 |
| STP | HRGMv2_2521_3 | HRGMv2_2521_3_38 | 47949 | 49067 | - | Pyr_redox |
| CAZyme | HRGMv2_2521_3 | HRGMv2_2521_3_39 | 49128 | 49997 | - | GT14 |
| CAZyme | HRGMv2_2521_3 | HRGMv2_2521_3_40 | 50013 | 50822 | - | GT111 |
| pfam | HRGMv2_2521_3 | HRGMv2_2521_3_41 | 50839 | 51459 | - | Wzz |
| NULL(UNKNOWN) | HRGMv2_2521_3 | HRGMv2_2521_3_42 | 51435 | 52634 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2521_3 | HRGMv2_2521_3_43 | 52652 | 53299 | - | 9.B.18.1.2 |
| CAZyme | HRGMv2_2521_3 | HRGMv2_2521_3_44 | 53311 | 54240 | - | GT2 |
| CAZyme | HRGMv2_2521_3 | HRGMv2_2521_3_45 | 54258 | 55025 | - | GT111 |
Gene ID: HRGMv2_2521_3_33
Type: CAZyme
Location: 41071 - 42528 (-)
Type: CAZyme
Location: 41071 - 42528 (-)
Gene ID: HRGMv2_2521_3_34
Type: TC
Location: 42686 - 44140 (-)
Type: TC
Location: 42686 - 44140 (-)
Gene ID: HRGMv2_2521_3_35
Type: pfam
Location: 44266 - 45345 (-)
Type: pfam
Location: 44266 - 45345 (-)
Gene ID: HRGMv2_2521_3_36
Type: CAZyme
Location: 45332 - 46390 (-)
Type: CAZyme
Location: 45332 - 46390 (-)
Gene ID: HRGMv2_2521_3_37
Type: TC
Location: 46390 - 47820 (-)
Type: TC
Location: 46390 - 47820 (-)
Gene ID: HRGMv2_2521_3_38
Type: STP
Location: 47949 - 49067 (-)
Type: STP
Location: 47949 - 49067 (-)
Gene ID: HRGMv2_2521_3_39
Type: CAZyme
Location: 49128 - 49997 (-)
Type: CAZyme
Location: 49128 - 49997 (-)
Gene ID: HRGMv2_2521_3_40
Type: CAZyme
Location: 50013 - 50822 (-)
Type: CAZyme
Location: 50013 - 50822 (-)
Gene ID: HRGMv2_2521_3_41
Type: pfam
Location: 50839 - 51459 (-)
Type: pfam
Location: 50839 - 51459 (-)
Gene ID: HRGMv2_2521_3_42
Type:
Location: 51435 - 52634 (-)
Type:
Location: 51435 - 52634 (-)
Gene ID: HRGMv2_2521_3_43
Type: TC
Location: 52652 - 53299 (-)
Type: TC
Location: 52652 - 53299 (-)
Gene ID: HRGMv2_2521_3_44
Type: CAZyme
Location: 53311 - 54240 (-)
Type: CAZyme
Location: 53311 - 54240 (-)
Gene ID: HRGMv2_2521_3_45
Type: CAZyme
Location: 54258 - 55025 (-)
Type: CAZyme
Location: 54258 - 55025 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Species
Limosilactobacillus caviae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.