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Cluster: HRGMv2_2521_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2521_8 HRGMv2_2521_8_46 41287 42306 + CBM50
pfam HRGMv2_2521_8 HRGMv2_2521_8_47 42679 43674 + ABC_sub_bind
TC HRGMv2_2521_8 HRGMv2_2521_8_48 43671 44570 + 3.A.1.34.1
TC HRGMv2_2521_8 HRGMv2_2521_8_49 44563 45327 + 3.A.1.34.1
TC HRGMv2_2521_8 HRGMv2_2521_8_50 45393 45956 + 2.A.77.1.3
TF HRGMv2_2521_8 HRGMv2_2521_8_51 46004 46336 + HTH_5
TC HRGMv2_2521_8 HRGMv2_2521_8_52 46453 47775 + 2.A.66.1.13
pfam HRGMv2_2521_8 HRGMv2_2521_8_53 47854 48171 - Thioredoxin | Thioredoxin_2 | TraF | Thioredoxin_8 | Thioredoxin_9
TC HRGMv2_2521_8 HRGMv2_2521_8_54 48161 48928 - 2.A.109.1.3
Gene ID: HRGMv2_2521_8_46
Type: CAZyme
Location: 41287 - 42306 (+)
Gene ID: HRGMv2_2521_8_47
Type: pfam
Location: 42679 - 43674 (+)
Gene ID: HRGMv2_2521_8_48
Type: TC
Location: 43671 - 44570 (+)
Gene ID: HRGMv2_2521_8_49
Type: TC
Location: 44563 - 45327 (+)
Gene ID: HRGMv2_2521_8_50
Type: TC
Location: 45393 - 45956 (+)
Gene ID: HRGMv2_2521_8_51
Type: TF
Location: 46004 - 46336 (+)
Gene ID: HRGMv2_2521_8_52
Type: TC
Location: 46453 - 47775 (+)
Gene ID: HRGMv2_2521_8_53
Type: pfam
Location: 47854 - 48171 (-)
Gene ID: HRGMv2_2521_8_54
Type: TC
Location: 48161 - 48928 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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