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Cluster: HRGMv2_2521_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2521_9 HRGMv2_2521_9_2 870 1595 + 3.A.1.23.1
TF HRGMv2_2521_9 HRGMv2_2521_9_3 1680 2390 - Trans_reg_C
pfam HRGMv2_2521_9 HRGMv2_2521_9_4 2516 3388 + PBP_like | PBP_like_2 | SBP_bac_11
TC HRGMv2_2521_9 HRGMv2_2521_9_5 3394 4293 + 3.A.1.7.5
TC HRGMv2_2521_9 HRGMv2_2521_9_6 4293 5174 + 3.A.1.7.4
TC HRGMv2_2521_9 HRGMv2_2521_9_7 5185 5940 + 3.A.1.7.5
pfam HRGMv2_2521_9 HRGMv2_2521_9_8 5953 6657 + PhoU | PhoU
pfam HRGMv2_2521_9 HRGMv2_2521_9_9 6673 7839 + DEAD | DUF87 | ResIII | TrwB_AAD_bind
TC HRGMv2_2521_9 HRGMv2_2521_9_10 9078 10391 + 2.A.1.6.10
NULL(UNKNOWN) HRGMv2_2521_9 HRGMv2_2521_9_11 10706 11542 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2521_9 HRGMv2_2521_9_12 11569 11712 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2521_9 HRGMv2_2521_9_13 11712 13019 + GT2
CAZyme HRGMv2_2521_9 HRGMv2_2521_9_14 13047 14177 + GH8
STP HRGMv2_2521_9 HRGMv2_2521_9_15 14174 14932 - Nitroreductase
pfam HRGMv2_2521_9 HRGMv2_2521_9_16 15020 16792 - MCRA | NAD_binding_8
TC HRGMv2_2521_9 HRGMv2_2521_9_17 16948 18291 + 2.A.38.4.1
TC HRGMv2_2521_9 HRGMv2_2521_9_18 18284 18952 + 2.A.38.4.4
pfam HRGMv2_2521_9 HRGMv2_2521_9_19 18970 19518 + Ubie_methyltran | Methyltransf_11 | Methyltransf_25 | Methyltransf_31
pfam HRGMv2_2521_9 HRGMv2_2521_9_20 19573 20670 - PDDEXK_2
TC HRGMv2_2521_9 HRGMv2_2521_9_21 20796 22100 - 2.A.55.2.6
Gene ID: HRGMv2_2521_9_2
Type: TC
Location: 870 - 1595 (+)
Gene ID: HRGMv2_2521_9_3
Type: TF
Location: 1680 - 2390 (-)
Gene ID: HRGMv2_2521_9_4
Type: pfam
Location: 2516 - 3388 (+)
Gene ID: HRGMv2_2521_9_5
Type: TC
Location: 3394 - 4293 (+)
Gene ID: HRGMv2_2521_9_6
Type: TC
Location: 4293 - 5174 (+)
Gene ID: HRGMv2_2521_9_7
Type: TC
Location: 5185 - 5940 (+)
Gene ID: HRGMv2_2521_9_8
Type: pfam
Location: 5953 - 6657 (+)
Gene ID: HRGMv2_2521_9_9
Type: pfam
Location: 6673 - 7839 (+)
Gene ID: HRGMv2_2521_9_10
Type: TC
Location: 9078 - 10391 (+)
Gene ID: HRGMv2_2521_9_11
Type:
Location: 10706 - 11542 (+)
Gene ID: HRGMv2_2521_9_12
Type:
Location: 11569 - 11712 (+)
Gene ID: HRGMv2_2521_9_13
Type: CAZyme
Location: 11712 - 13019 (+)
Gene ID: HRGMv2_2521_9_14
Type: CAZyme
Location: 13047 - 14177 (+)
Gene ID: HRGMv2_2521_9_15
Type: STP
Location: 14174 - 14932 (-)
Gene ID: HRGMv2_2521_9_16
Type: pfam
Location: 15020 - 16792 (-)
Gene ID: HRGMv2_2521_9_17
Type: TC
Location: 16948 - 18291 (+)
Gene ID: HRGMv2_2521_9_18
Type: TC
Location: 18284 - 18952 (+)
Gene ID: HRGMv2_2521_9_19
Type: pfam
Location: 18970 - 19518 (+)
Gene ID: HRGMv2_2521_9_20
Type: pfam
Location: 19573 - 20670 (-)
Gene ID: HRGMv2_2521_9_21
Type: TC
Location: 20796 - 22100 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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