Genome Details
Selected Rep_genome_ID: HRGMv2_0301
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella melaninogenica
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR088922 | 3,054,033 | 97.97% | 0% | China | Asia | CGMR |
| HRGMv2_0301 | 3,181,148 | 99.32% | 0% | South Korea | Asia | HRGM |
| MGYG000003287 | 3,259,243 | 96.85% | 0.34% | United States | North America | UHGG |
| Rep_140 | 2,899,349 | 93.2245% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0301_CGC35 | CGCFAM_00001 | Yes | 6 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| HRGMv2_0301_CGC27 | CGCFAM_00007 | Yes | 15 | 5 | |
| HRGMv2_0301_CGC6 | CGCFAM_00016 | Yes | 9 | 3 | host glycan |
| HRGMv2_0301_CGC14 | CGCFAM_00017 | Yes | 5 | 1 | fructan |
| HRGMv2_0301_CGC15 | CGCFAM_00034 | Yes | 10 | 4 | |
| HRGMv2_0301_CGC2 | CGCFAM_00059 | Yes | 4 | 1 | |
| HRGMv2_0301_CGC16 | CGCFAM_00118 | Yes | 4 | 1 | |
| HRGMv2_0301_CGC8 | CGCFAM_00147 | Yes | 3 | 1 | |
| HRGMv2_0301_CGC30 | CGCFAM_00180 | Yes | 11 | 6 | |
| HRGMv2_0301_CGC25 | CGCFAM_00192 | Yes | 3 | 1 | |
| HRGMv2_0301_CGC29 | CGCFAM_00301 | Yes | 4 | 2 | |
| HRGMv2_0301_CGC31 | CGCFAM_00379 | Yes | 7 | 3 | |
| HRGMv2_0301_CGC7 | CGCFAM_00536 | Yes | 4 | 1 | |
| HRGMv2_0301_CGC19 | CGCFAM_00648 | Yes | 5 | 3 | |
| HRGMv2_0301_CGC3 | CGCFAM_00808 | Yes | 4 | 1 | |
| HRGMv2_0301_CGC21 | CGCFAM_01101 | Yes | 3 | 1 | |
| HRGMv2_0301_CGC18 | CGCFAM_04678 | Yes | 3 | 2 | |
| HRGMv2_0301_CGC37 | CGCFAM_04858 | Yes | 3 | 1 | |
| HRGMv2_0301_CGC5 | CGCFAM_08206 | Yes | 4 | 1 | |
| HRGMv2_0301_CGC34 | CGCFAM_09543 | Yes | 4 | 1 |
Top CAZyme Families