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Cluster: HRGMv2_0301_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0301_12 HRGMv2_0301_12_15 16678 17622 + GT2
pfam HRGMv2_0301_12 HRGMv2_0301_12_16 17634 18053 + GtrA_DPMS_TM
CAZyme HRGMv2_0301_12 HRGMv2_0301_12_17 18289 19413 - GT4
pfam HRGMv2_0301_12 HRGMv2_0301_12_18 19406 20587 - GT87
CAZyme HRGMv2_0301_12 HRGMv2_0301_12_19 20836 21609 + GT2
CAZyme HRGMv2_0301_12 HRGMv2_0301_12_20 21961 22962 - GT2
CAZyme HRGMv2_0301_12 HRGMv2_0301_12_21 23009 23947 - GT2
pfam HRGMv2_0301_12 HRGMv2_0301_12_22 23977 25950 - Sulfatase
CAZyme HRGMv2_0301_12 HRGMv2_0301_12_23 26280 27095 - GT11
pfam HRGMv2_0301_12 HRGMv2_0301_12_24 27092 28066 - Lip_A_acyltrans
TC HRGMv2_0301_12 HRGMv2_0301_12_25 28102 29961 - 3.A.1.106.2
Gene ID: HRGMv2_0301_12_15
Type: CAZyme
Location: 16678 - 17622 (+)
Gene ID: HRGMv2_0301_12_16
Type: pfam
Location: 17634 - 18053 (+)
Gene ID: HRGMv2_0301_12_17
Type: CAZyme
Location: 18289 - 19413 (-)
Gene ID: HRGMv2_0301_12_18
Type: pfam
Location: 19406 - 20587 (-)
Gene ID: HRGMv2_0301_12_19
Type: CAZyme
Location: 20836 - 21609 (+)
Gene ID: HRGMv2_0301_12_20
Type: CAZyme
Location: 21961 - 22962 (-)
Gene ID: HRGMv2_0301_12_21
Type: CAZyme
Location: 23009 - 23947 (-)
Gene ID: HRGMv2_0301_12_22
Type: pfam
Location: 23977 - 25950 (-)
Gene ID: HRGMv2_0301_12_23
Type: CAZyme
Location: 26280 - 27095 (-)
Gene ID: HRGMv2_0301_12_24
Type: pfam
Location: 27092 - 28066 (-)
Gene ID: HRGMv2_0301_12_25
Type: TC
Location: 28102 - 29961 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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