Genome Details
Selected Rep_genome_ID: HRGMv2_0265
Total Genomes Found: 13
Total Genomes Found: 13
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG343_bin.28_sub | 2,998,947 | 95.55% | 1.18% | NA | Africa | H3AfricaPhase2 |
| AG376_bin.10 | 2,743,238 | 94.47% | 0% | NA | Africa | H3AfricaPhase2 |
| CGMR073940 | 2,855,987 | 95.1% | 0.84% | China | Asia | CGMR |
| DianaHT_2018_SRR6795016_bin.14 | 2,737,417 | 94.3% | 0.382% | Bangladesh | Asia | ELGG |
| GCA_021625545.1_ASM2162554v1_genomic | 2,859,728 | 95.48% | 3.9% | NA | Africa | H3AfricaPhase1 |
| GCA_021631305.1_ASM2163130v1_genomic | 2,742,935 | 94.75% | 0.84% | NA | Africa | H3AfricaPhase1 |
| GCA_021638625.1_ASM2163862v1_genomic | 2,706,563 | 93.47% | 3.36% | NA | Africa | H3AfricaPhase1 |
| GCA_021640205.1_ASM2164020v1_genomic | 3,295,481 | 96.88% | 1.75% | NA | Africa | H3AfricaPhase1 |
| HRGMv2_0265 | 2,837,578 | 97.4% | 0.185% | Japan | Asia | HRGM |
| HRGMv2_0266 | 2,948,643 | 95.84% | 0.74% | Congo | Africa | HRGM |
| MGYG000002133 | 2,840,923 | 96.32% | 0.37% | United States | North America | UHGG |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_N_11_1304.97 | 3,220,704 | 96.1% | 0% | NA | Africa | Hadza |
| Rep_221 | 3,512,682 | 98.6487% | 2.53378% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0265_CGC28 | CGCFAM_00029 | Yes | 7 | 1 | |
| HRGMv2_0265_CGC12 | CGCFAM_00034 | Yes | 12 | 5 | |
| HRGMv2_0265_CGC38 | CGCFAM_00048 | Yes | 15 | 6 | |
| HRGMv2_0265_CGC18 | CGCFAM_00059 | Yes | 7 | 2 | |
| HRGMv2_0265_CGC31 | CGCFAM_00081 | Yes | 13 | 1 | |
| HRGMv2_0265_CGC34 | CGCFAM_00120 | Yes | 5 | 3 | |
| HRGMv2_0265_CGC5 | CGCFAM_00604 | Yes | 14 | 2 | |
| HRGMv2_0265_CGC13 | CGCFAM_00630 | Yes | 7 | 1 | |
| HRGMv2_0265_CGC2 | CGCFAM_00644 | Yes | 5 | 1 | |
| HRGMv2_0265_CGC8 | CGCFAM_01244 | Yes | 10 | 5 | pectin |
| HRGMv2_0265_CGC14 | CGCFAM_01603 | Yes | 5 | 1 | |
| HRGMv2_0265_CGC35 | CGCFAM_03861 | Yes | 3 | 1 | |
| HRGMv2_0265_CGC36 | CGCFAM_07232 | Yes | 3 | 1 | |
| HRGMv2_0265_CGC19 | CGCFAM_07318 | Yes | 5 | 2 | |
| HRGMv2_0265_CGC27 | CGCFAM_09138 | Yes | 3 | 1 | |
| HRGMv2_0265_CGC29 | CGCFAM_09562 | Yes | 3 | 1 |
Top CAZyme Families