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Cluster: HRGMv2_0265_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0265_3 HRGMv2_0265_3_23 28674 31913 + 1.B.14.6.1
pfam HRGMv2_0265_3 HRGMv2_0265_3_24 31964 33769 + SusD_RagB | SusD-like_3
pfam HRGMv2_0265_3 HRGMv2_0265_3_25 33854 35434 + DUF4957 | DUF5123
CAZyme HRGMv2_0265_3 HRGMv2_0265_3_26 35536 36438 - CE4
CAZyme HRGMv2_0265_3 HRGMv2_0265_3_27 36665 38248 + GH28
STP HRGMv2_0265_3 HRGMv2_0265_3_28 38653 39471 - Response_reg
pfam HRGMv2_0265_3 HRGMv2_0265_3_29 39525 41591 - His_kinase | TPR_8 | TPR_8
CAZyme HRGMv2_0265_3 HRGMv2_0265_3_30 41704 43140 - GH57
CAZyme HRGMv2_0265_3 HRGMv2_0265_3_31 43166 44434 - GT4
CAZyme HRGMv2_0265_3 HRGMv2_0265_3_32 44453 46399 - GH133
Gene ID: HRGMv2_0265_3_23
Type: TC
Location: 28674 - 31913 (+)
Gene ID: HRGMv2_0265_3_24
Type: pfam
Location: 31964 - 33769 (+)
Gene ID: HRGMv2_0265_3_25
Type: pfam
Location: 33854 - 35434 (+)
Gene ID: HRGMv2_0265_3_26
Type: CAZyme
Location: 35536 - 36438 (-)
Gene ID: HRGMv2_0265_3_27
Type: CAZyme
Location: 36665 - 38248 (+)
Gene ID: HRGMv2_0265_3_28
Type: STP
Location: 38653 - 39471 (-)
Gene ID: HRGMv2_0265_3_29
Type: pfam
Location: 39525 - 41591 (-)
Gene ID: HRGMv2_0265_3_30
Type: CAZyme
Location: 41704 - 43140 (-)
Gene ID: HRGMv2_0265_3_31
Type: CAZyme
Location: 43166 - 44434 (-)
Gene ID: HRGMv2_0265_3_32
Type: CAZyme
Location: 44453 - 46399 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0265_3_30 vegetarian > vegan 1.15104 0.03196

🧭 Explore Read Mapping of CGC

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