Cluster: HRGMv2_0265_CGC38
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0265
- CGC Family ID: CGCFAM_00048
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0265_42 | HRGMv2_0265_42_1 | 64 | 2136 | - | CBM91 | GH43_10 |
| pfam | HRGMv2_0265_42 | HRGMv2_0265_42_2 | 2391 | 5054 | - | tRNA-synt_2c | DHHA1 | tRNA_SAD |
| TF | HRGMv2_0265_42 | HRGMv2_0265_42_3 | 5248 | 5598 | + | MerR |
| CAZyme | HRGMv2_0265_42 | HRGMv2_0265_42_4 | 5725 | 6708 | - | CE8 |
| STP | HRGMv2_0265_42 | HRGMv2_0265_42_5 | 6809 | 9094 | - | HD |
| CAZyme | HRGMv2_0265_42 | HRGMv2_0265_42_6 | 9183 | 10502 | - | GH23 |
| pfam | HRGMv2_0265_42 | HRGMv2_0265_42_7 | 10624 | 11424 | - | DUF5683 |
| pfam | HRGMv2_0265_42 | HRGMv2_0265_42_8 | 11429 | 12322 | - | ParBc | HTH_ParB | ParB_dimer |
| TC | HRGMv2_0265_42 | HRGMv2_0265_42_9 | 12471 | 13235 | - | 8.A.3.2.3 |
| pfam | HRGMv2_0265_42 | HRGMv2_0265_42_10 | 13471 | 14244 | + | SurE |
| CAZyme | HRGMv2_0265_42 | HRGMv2_0265_42_11 | 14261 | 15403 | + | GT19 |
| pfam | HRGMv2_0265_42 | HRGMv2_0265_42_12 | 15531 | 16526 | - | Metallophos |
| pfam | HRGMv2_0265_42 | HRGMv2_0265_42_13 | 16537 | 17001 | - | MaoC_dehydratas |
| CAZyme | HRGMv2_0265_42 | HRGMv2_0265_42_14 | 17016 | 18089 | - | GH43_19 |
| CAZyme | HRGMv2_0265_42 | HRGMv2_0265_42_15 | 18255 | 21905 | + | GH43_19 | GH43_34 |
Gene ID: HRGMv2_0265_42_1
Type: CAZyme
Location: 64 - 2136 (-)
Type: CAZyme
Location: 64 - 2136 (-)
Gene ID: HRGMv2_0265_42_2
Type: pfam
Location: 2391 - 5054 (-)
Type: pfam
Location: 2391 - 5054 (-)
Gene ID: HRGMv2_0265_42_3
Type: TF
Location: 5248 - 5598 (+)
Type: TF
Location: 5248 - 5598 (+)
Gene ID: HRGMv2_0265_42_4
Type: CAZyme
Location: 5725 - 6708 (-)
Type: CAZyme
Location: 5725 - 6708 (-)
Gene ID: HRGMv2_0265_42_5
Type: STP
Location: 6809 - 9094 (-)
Type: STP
Location: 6809 - 9094 (-)
Gene ID: HRGMv2_0265_42_6
Type: CAZyme
Location: 9183 - 10502 (-)
Type: CAZyme
Location: 9183 - 10502 (-)
Gene ID: HRGMv2_0265_42_7
Type: pfam
Location: 10624 - 11424 (-)
Type: pfam
Location: 10624 - 11424 (-)
Gene ID: HRGMv2_0265_42_8
Type: pfam
Location: 11429 - 12322 (-)
Type: pfam
Location: 11429 - 12322 (-)
Gene ID: HRGMv2_0265_42_9
Type: TC
Location: 12471 - 13235 (-)
Type: TC
Location: 12471 - 13235 (-)
Gene ID: HRGMv2_0265_42_10
Type: pfam
Location: 13471 - 14244 (+)
Type: pfam
Location: 13471 - 14244 (+)
Gene ID: HRGMv2_0265_42_11
Type: CAZyme
Location: 14261 - 15403 (+)
Type: CAZyme
Location: 14261 - 15403 (+)
Gene ID: HRGMv2_0265_42_12
Type: pfam
Location: 15531 - 16526 (-)
Type: pfam
Location: 15531 - 16526 (-)
Gene ID: HRGMv2_0265_42_13
Type: pfam
Location: 16537 - 17001 (-)
Type: pfam
Location: 16537 - 17001 (-)
Gene ID: HRGMv2_0265_42_14
Type: CAZyme
Location: 17016 - 18089 (-)
Type: CAZyme
Location: 17016 - 18089 (-)
Gene ID: HRGMv2_0265_42_15
Type: CAZyme
Location: 18255 - 21905 (+)
Type: CAZyme
Location: 18255 - 21905 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000436915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.