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Cluster: HRGMv2_0265_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0265_2 HRGMv2_0265_2_4 3547 5241 + 2.A.81.1.2
CAZyme HRGMv2_0265_2 HRGMv2_0265_2_5 5357 6673 - CE7
TC HRGMv2_0265_2 HRGMv2_0265_2_6 6774 7748 - 3.A.2.1.5
TC HRGMv2_0265_2 HRGMv2_0265_2_7 7755 9341 - 3.A.2.1.4
pfam HRGMv2_0265_2 HRGMv2_0265_2_8 9353 9889 - OSCP
pfam HRGMv2_0265_2 HRGMv2_0265_2_9 9895 10416 - ATP-synt_B | YMF19
TC HRGMv2_0265_2 HRGMv2_0265_2_10 10449 10688 - 3.A.2.1.6
TC HRGMv2_0265_2 HRGMv2_0265_2_11 10798 11856 - 3.A.2.1.7
NULL(UNKNOWN) HRGMv2_0265_2 HRGMv2_0265_2_12 11857 12285 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0265_2 HRGMv2_0265_2_13 12300 12542 - ATP-synt_DE_N
TC HRGMv2_0265_2 HRGMv2_0265_2_14 12576 14102 - 3.A.2.1.2
pfam HRGMv2_0265_2 HRGMv2_0265_2_15 14157 15134 - PFK
TC HRGMv2_0265_2 HRGMv2_0265_2_16 15201 16634 - 2.A.62.1.3
CAZyme HRGMv2_0265_2 HRGMv2_0265_2_17 16856 17890 - GT2
Gene ID: HRGMv2_0265_2_4
Type: TC
Location: 3547 - 5241 (+)
Gene ID: HRGMv2_0265_2_5
Type: CAZyme
Location: 5357 - 6673 (-)
Gene ID: HRGMv2_0265_2_6
Type: TC
Location: 6774 - 7748 (-)
Gene ID: HRGMv2_0265_2_7
Type: TC
Location: 7755 - 9341 (-)
Gene ID: HRGMv2_0265_2_8
Type: pfam
Location: 9353 - 9889 (-)
Gene ID: HRGMv2_0265_2_9
Type: pfam
Location: 9895 - 10416 (-)
Gene ID: HRGMv2_0265_2_10
Type: TC
Location: 10449 - 10688 (-)
Gene ID: HRGMv2_0265_2_11
Type: TC
Location: 10798 - 11856 (-)
Gene ID: HRGMv2_0265_2_12
Type:
Location: 11857 - 12285 (-)
Gene ID: HRGMv2_0265_2_13
Type: pfam
Location: 12300 - 12542 (-)
Gene ID: HRGMv2_0265_2_14
Type: TC
Location: 12576 - 14102 (-)
Gene ID: HRGMv2_0265_2_15
Type: pfam
Location: 14157 - 15134 (-)
Gene ID: HRGMv2_0265_2_16
Type: TC
Location: 15201 - 16634 (-)
Gene ID: HRGMv2_0265_2_17
Type: CAZyme
Location: 16856 - 17890 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0265_2_10 vegan > omnivore 2.87754 0.03310

🧭 Explore Read Mapping of CGC

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