Genome Details
Selected Rep_genome_ID: HRGMv2_0171
Total Genomes Found: 6
Total Genomes Found: 6
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp002251385
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| GCA_021625525.1_ASM2162552v1_genomic | 2,623,047 | 92.72% | 0.36% | NA | Africa | H3AfricaPhase1 |
| GCA_021637735.1_ASM2163773v1_genomic | 2,696,061 | 96.14% | 1.32% | NA | Africa | H3AfricaPhase1 |
| HRGMv2_0171 | 2,792,211 | 98.79% | 0% | US | North America | HRGM |
| MGYG000004371 | 2,690,194 | 97.57% | 0.09% | Israel | Asia | UHGG |
| Rep_199 | 3,111,513 | 98.1429% | 0.47619% | NA | NA | WIS |
| SW025_8 | 3,350,462 | 98.14% | 0.36% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0171_CGC4 | CGCFAM_00003 | Yes | 13 | 2 | |
| HRGMv2_0171_CGC42 | CGCFAM_00025 | Yes | 4 | 1 | pectin/alpha-glucan |
| HRGMv2_0171_CGC39 | CGCFAM_00034 | Yes | 5 | 4 | |
| HRGMv2_0171_CGC29 | CGCFAM_00043 | Yes | 6 | 2 | alpha-glucan |
| HRGMv2_0171_CGC9 | CGCFAM_00072 | Yes | 6 | 2 | |
| HRGMv2_0171_CGC22 | CGCFAM_00254 | Yes | 4 | 1 | |
| HRGMv2_0171_CGC37 | CGCFAM_00358 | Yes | 4 | 1 | |
| HRGMv2_0171_CGC12 | CGCFAM_00742 | Yes | 6 | 4 | |
| HRGMv2_0171_CGC18 | CGCFAM_00779 | Yes | 3 | 1 | |
| HRGMv2_0171_CGC19 | CGCFAM_00795 | Yes | 6 | 1 | |
| HRGMv2_0171_CGC38 | CGCFAM_01003 | Yes | 5 | 3 | |
| HRGMv2_0171_CGC31 | CGCFAM_01047 | Yes | 5 | 1 | |
| HRGMv2_0171_CGC26 | CGCFAM_01216 | Yes | 4 | 2 | |
| HRGMv2_0171_CGC24 | CGCFAM_01270 | Yes | 6 | 1 | |
| HRGMv2_0171_CGC21 | CGCFAM_01569 | Yes | 3 | 1 | |
| HRGMv2_0171_CGC41 | CGCFAM_01780 | Yes | 4 | 1 | |
| HRGMv2_0171_CGC17 | CGCFAM_01796 | Yes | 6 | 1 | |
| HRGMv2_0171_CGC15 | CGCFAM_03194 | Yes | 3 | 1 | |
| HRGMv2_0171_CGC11 | CGCFAM_09524 | Yes | 7 | 1 | |
| HRGMv2_0171_CGC34 | CGCFAM_09525 | Yes | 5 | 2 |
Top CAZyme Families