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Cluster: HRGMv2_0171_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0171_1 HRGMv2_0171_1_90 115657 116073 - 2.A.7.2.1
pfam HRGMv2_0171_1 HRGMv2_0171_1_91 116151 116771 - HU-HIG
CAZyme HRGMv2_0171_1 HRGMv2_0171_1_92 117235 118800 + GT83
pfam HRGMv2_0171_1 HRGMv2_0171_1_93 118825 119910 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme HRGMv2_0171_1 HRGMv2_0171_1_94 119998 120738 + GT2
TC HRGMv2_0171_1 HRGMv2_0171_1_95 120776 121438 + 2.A.123.4.1
NULL(UNKNOWN) HRGMv2_0171_1 HRGMv2_0171_1_96 121543 121677 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0171_1 HRGMv2_0171_1_97 121664 123439 + Fucose_iso_C | Fucose_iso_N1 | Fucose_iso_N2
TC HRGMv2_0171_1 HRGMv2_0171_1_98 123593 124879 + 2.A.1.7.5
NULL(UNKNOWN) HRGMv2_0171_1 HRGMv2_0171_1_99 125108 125476 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_0171_1 HRGMv2_0171_1_100 125483 125902 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0171_1 HRGMv2_0171_1_101 126725 129421 + 1.B.14.6.1
TC HRGMv2_0171_1 HRGMv2_0171_1_102 129434 131050 + 8.A.46.1.1
Gene ID: HRGMv2_0171_1_90
Type: TC
Location: 115657 - 116073 (-)
Gene ID: HRGMv2_0171_1_91
Type: pfam
Location: 116151 - 116771 (-)
Gene ID: HRGMv2_0171_1_92
Type: CAZyme
Location: 117235 - 118800 (+)
Gene ID: HRGMv2_0171_1_93
Type: pfam
Location: 118825 - 119910 (+)
Gene ID: HRGMv2_0171_1_94
Type: CAZyme
Location: 119998 - 120738 (+)
Gene ID: HRGMv2_0171_1_95
Type: TC
Location: 120776 - 121438 (+)
Gene ID: HRGMv2_0171_1_96
Type:
Location: 121543 - 121677 (+)
Gene ID: HRGMv2_0171_1_97
Type: pfam
Location: 121664 - 123439 (+)
Gene ID: HRGMv2_0171_1_98
Type: TC
Location: 123593 - 124879 (+)
Gene ID: HRGMv2_0171_1_99
Type:
Location: 125108 - 125476 (+)
Gene ID: HRGMv2_0171_1_100
Type:
Location: 125483 - 125902 (+)
Gene ID: HRGMv2_0171_1_101
Type: TC
Location: 126725 - 129421 (+)
Gene ID: HRGMv2_0171_1_102
Type: TC
Location: 129434 - 131050 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0171_1_101 vegetarian > omnivore 1.69534 0.03761

🧭 Explore Read Mapping of CGC

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