Cluster: HRGMv2_0171_CGC42
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: pectin/alpha-glucan
- Genome ID: HRGMv2_0171
- CGC Family ID: CGCFAM_00025
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0171_67 | HRGMv2_0171_67_1 | 1 | 1035 | + | 8.A.46.1.1 |
| pfam | HRGMv2_0171_67 | HRGMv2_0171_67_2 | 1068 | 1952 | + | SusE |
| pfam | HRGMv2_0171_67 | HRGMv2_0171_67_3 | 1983 | 2870 | + | SusF_N |
| CAZyme | HRGMv2_0171_67 | HRGMv2_0171_67_4 | 3206 | 5230 | + | GH13_6 |
Gene ID: HRGMv2_0171_67_1
Type: TC
Location: 1 - 1035 (+)
Type: TC
Location: 1 - 1035 (+)
Gene ID: HRGMv2_0171_67_2
Type: pfam
Location: 1068 - 1952 (+)
Type: pfam
Location: 1068 - 1952 (+)
Gene ID: HRGMv2_0171_67_3
Type: pfam
Location: 1983 - 2870 (+)
Type: pfam
Location: 1983 - 2870 (+)
Gene ID: HRGMv2_0171_67_4
Type: CAZyme
Location: 3206 - 5230 (+)
Type: CAZyme
Location: 3206 - 5230 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp002251385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.