Cluster: HRGMv2_0171_CGC34
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0171
- CGC Family ID: CGCFAM_09525
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0171_28 | HRGMv2_0171_28_2 | 1021 | 2997 | + | CE20 | CE20 |
| TC | HRGMv2_0171_28 | HRGMv2_0171_28_3 | 3256 | 5235 | + | 2.A.67.4.2 |
| NULL(UNKNOWN) | HRGMv2_0171_28 | HRGMv2_0171_28_4 | 5264 | 6481 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0171_28 | HRGMv2_0171_28_5 | 6624 | 9338 | + | UvrD-helicase | RNase_T | AAA_19 | UvrD_C | UvrD_C_2 |
| CAZyme | HRGMv2_0171_28 | HRGMv2_0171_28_6 | 9407 | 10702 | + | GH33 |
Gene ID: HRGMv2_0171_28_2
Type: CAZyme
Location: 1021 - 2997 (+)
Type: CAZyme
Location: 1021 - 2997 (+)
Gene ID: HRGMv2_0171_28_3
Type: TC
Location: 3256 - 5235 (+)
Type: TC
Location: 3256 - 5235 (+)
Gene ID: HRGMv2_0171_28_4
Type:
Location: 5264 - 6481 (+)
Type:
Location: 5264 - 6481 (+)
Gene ID: HRGMv2_0171_28_5
Type: pfam
Location: 6624 - 9338 (+)
Type: pfam
Location: 6624 - 9338 (+)
Gene ID: HRGMv2_0171_28_6
Type: CAZyme
Location: 9407 - 10702 (+)
Type: CAZyme
Location: 9407 - 10702 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp002251385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.