Genome Details
Selected Rep_genome_ID: CGMR049318
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella tanakaei
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| A38.bin_20 | 2,442,943 | 100% | 0.81% | China(Inner Mongolia) | Asia | IMGG |
| CGMR049318 | 2,374,230 | 97.98% | 0% | China | Asia | CGMR |
| SPMP05_bin.1 | 2,416,306 | 99.63% | 0.54% | Singapore | Asia | SPMP |
| SPMP101_bin.54 | 2,448,232 | 97.23% | 1.21% | Singapore | Asia | SPMP |
| SW148_bin.1 | 2,286,849 | 97.58% | 0.81% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| CGMR049318_CGC2 | CGCFAM_00008 | Yes | 9 | 7 | |
| CGMR049318_CGC10 | CGCFAM_00010 | Yes | 6 | 1 | alpha-glucan |
| CGMR049318_CGC7 | CGCFAM_00013 | Yes | 4 | 1 | |
| CGMR049318_CGC16 | CGCFAM_00066 | Yes | 5 | 1 | beta-mannan |
| CGMR049318_CGC3 | CGCFAM_00099 | Yes | 3 | 1 | |
| CGMR049318_CGC9 | CGCFAM_00191 | Yes | 15 | 2 | |
| CGMR049318_CGC6 | CGCFAM_00309 | Yes | 4 | 1 | |
| CGMR049318_CGC19 | CGCFAM_00325 | Yes | 5 | 1 | |
| CGMR049318_CGC5 | CGCFAM_03704 | Yes | 5 | 2 | |
| CGMR049318_CGC1 | CGCFAM_03826 | Yes | 12 | 2 | |
| CGMR049318_CGC23 | CGCFAM_03827 | Yes | 7 | 1 | |
| CGMR049318_CGC12 | CGCFAM_08640 | Yes | 4 | 1 | |
| CGMR049318_CGC13 | CGCFAM_08641 | Yes | 6 | 1 | |
| CGMR049318_CGC4 | CGCFAM_08642 | Yes | 5 | 1 |
Top CAZyme Families