Cluster: CGMR049318_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR049318
- CGC Family ID: CGCFAM_03827
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_117344 | k141_117344_26 | 31000 | 33027 | + | 4.A.1.2.13 |
| CAZyme | k141_117344 | k141_117344_27 | 33084 | 34814 | + | GH13_29 |
| NULL(UNKNOWN) | k141_117344 | k141_117344_28 | 34983 | 35624 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_117344 | k141_117344_29 | 36693 | 37001 | + | Thiamine_BP |
| TC | k141_117344 | k141_117344_30 | 37003 | 37818 | + | 3.A.1.17.13 |
| TC | k141_117344 | k141_117344_31 | 37827 | 38900 | + | 3.A.1.17.8 |
| TC | k141_117344 | k141_117344_32 | 39060 | 39812 | + | 3.A.1.17.13 |
Gene ID: k141_117344_26
Type: TC
Location: 31000 - 33027 (+)
Type: TC
Location: 31000 - 33027 (+)
Gene ID: k141_117344_27
Type: CAZyme
Location: 33084 - 34814 (+)
Type: CAZyme
Location: 33084 - 34814 (+)
Gene ID: k141_117344_28
Type:
Location: 34983 - 35624 (-)
Type:
Location: 34983 - 35624 (-)
Gene ID: k141_117344_29
Type: pfam
Location: 36693 - 37001 (+)
Type: pfam
Location: 36693 - 37001 (+)
Gene ID: k141_117344_30
Type: TC
Location: 37003 - 37818 (+)
Type: TC
Location: 37003 - 37818 (+)
Gene ID: k141_117344_31
Type: TC
Location: 37827 - 38900 (+)
Type: TC
Location: 37827 - 38900 (+)
Gene ID: k141_117344_32
Type: TC
Location: 39060 - 39812 (+)
Type: TC
Location: 39060 - 39812 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella tanakaei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.