Cluster: CGMR049318_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: CGMR049318
- CGC Family ID: CGCFAM_00010
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_272181 | k141_272181_21 | 19181 | 20521 | + | 3.A.1.1.45 |
| TC | k141_272181 | k141_272181_22 | 20665 | 21507 | + | 3.A.1.1.45 |
| TC | k141_272181 | k141_272181_23 | 21507 | 22346 | + | 3.A.1.1.45 |
| TF | k141_272181 | k141_272181_24 | 22367 | 23395 | + | LacI |
| CAZyme | k141_272181 | k141_272181_25 | 23398 | 24954 | + | GH77 |
| TC | k141_272181 | k141_272181_26 | 25036 | 26214 | + | 3.A.1.1.26 |
Gene ID: k141_272181_21
Type: TC
Location: 19181 - 20521 (+)
Type: TC
Location: 19181 - 20521 (+)
Gene ID: k141_272181_22
Type: TC
Location: 20665 - 21507 (+)
Type: TC
Location: 20665 - 21507 (+)
Gene ID: k141_272181_23
Type: TC
Location: 21507 - 22346 (+)
Type: TC
Location: 21507 - 22346 (+)
Gene ID: k141_272181_24
Type: TF
Location: 22367 - 23395 (+)
Type: TF
Location: 22367 - 23395 (+)
Gene ID: k141_272181_25
Type: CAZyme
Location: 23398 - 24954 (+)
Type: CAZyme
Location: 23398 - 24954 (+)
Gene ID: k141_272181_26
Type: TC
Location: 25036 - 26214 (+)
Type: TC
Location: 25036 - 26214 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella tanakaei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_272181_23 | vegetarian > vegan | 1.42669 | 0.00863 |
| k141_272181_26 | vegetarian > vegan | 1.04301 | 0.00863 |