Cluster: CGMR049318_CGC9
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR049318
- CGC Family ID: CGCFAM_00191
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_124275 | k141_124275_7 | 5827 | 6273 | + | 4.A.6.1.8 |
| pfam | k141_124275 | k141_124275_8 | 6273 | 6557 | + | YajC |
| TC | k141_124275 | k141_124275_9 | 6632 | 7114 | + | 4.A.6.1.4 |
| TC | k141_124275 | k141_124275_10 | 7207 | 8004 | + | 4.A.6.1.4 |
| TC | k141_124275 | k141_124275_11 | 7994 | 9076 | + | 4.A.6.1.4 |
| TF | k141_124275 | k141_124275_12 | 9223 | 9954 | + | GntR |
| STP | k141_124275 | k141_124275_13 | 10067 | 11233 | + | SIS |
| CAZyme | k141_124275 | k141_124275_14 | 11441 | 12601 | + | CE9 |
| pfam | k141_124275 | k141_124275_15 | 12820 | 13695 | + | Aldose_epim |
| STP | k141_124275 | k141_124275_16 | 13771 | 14706 | + | PfkB |
| CAZyme | k141_124275 | k141_124275_17 | 14922 | 16352 | - | GH1 |
| TC | k141_124275 | k141_124275_18 | 16492 | 18378 | - | 4.A.3.1.1 |
| NULL(UNKNOWN) | k141_124275 | k141_124275_19 | 19110 | 19202 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_124275 | k141_124275_20 | 19467 | 20513 | + | LacI |
| TC | k141_124275 | k141_124275_21 | 20586 | 20924 | - | 4.A.3.1.2 |
Gene ID: k141_124275_7
Type: TC
Location: 5827 - 6273 (+)
Type: TC
Location: 5827 - 6273 (+)
Gene ID: k141_124275_8
Type: pfam
Location: 6273 - 6557 (+)
Type: pfam
Location: 6273 - 6557 (+)
Gene ID: k141_124275_9
Type: TC
Location: 6632 - 7114 (+)
Type: TC
Location: 6632 - 7114 (+)
Gene ID: k141_124275_10
Type: TC
Location: 7207 - 8004 (+)
Type: TC
Location: 7207 - 8004 (+)
Gene ID: k141_124275_11
Type: TC
Location: 7994 - 9076 (+)
Type: TC
Location: 7994 - 9076 (+)
Gene ID: k141_124275_12
Type: TF
Location: 9223 - 9954 (+)
Type: TF
Location: 9223 - 9954 (+)
Gene ID: k141_124275_13
Type: STP
Location: 10067 - 11233 (+)
Type: STP
Location: 10067 - 11233 (+)
Gene ID: k141_124275_14
Type: CAZyme
Location: 11441 - 12601 (+)
Type: CAZyme
Location: 11441 - 12601 (+)
Gene ID: k141_124275_15
Type: pfam
Location: 12820 - 13695 (+)
Type: pfam
Location: 12820 - 13695 (+)
Gene ID: k141_124275_16
Type: STP
Location: 13771 - 14706 (+)
Type: STP
Location: 13771 - 14706 (+)
Gene ID: k141_124275_17
Type: CAZyme
Location: 14922 - 16352 (-)
Type: CAZyme
Location: 14922 - 16352 (-)
Gene ID: k141_124275_18
Type: TC
Location: 16492 - 18378 (-)
Type: TC
Location: 16492 - 18378 (-)
Gene ID: k141_124275_19
Type:
Location: 19110 - 19202 (+)
Type:
Location: 19110 - 19202 (+)
Gene ID: k141_124275_20
Type: TF
Location: 19467 - 20513 (+)
Type: TF
Location: 19467 - 20513 (+)
Gene ID: k141_124275_21
Type: TC
Location: 20586 - 20924 (-)
Type: TC
Location: 20586 - 20924 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella tanakaei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.