Genome Details
Selected Rep_genome_ID: C46.CMAG_1
Total Genomes Found: 52
Total Genomes Found: 52
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetia
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium longum
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG342_27 | 2,536,171 | 100% | 0% | NA | Africa | H3AfricaPhase2 |
| C46.CMAG_1 | 2,521,160 | 100% | 0% | China(Inner Mongolia) | Asia | IMGG |
| CGMR075197 | 2,181,781 | 100% | 0% | China | Asia | CGMR |
| GCA_021617965.1_ASM2161796v1_genomic | 2,201,179 | 98.27% | 0.4% | NA | Africa | H3AfricaPhase1 |
| GCA_021619765.1_ASM2161976v1_genomic | 2,270,437 | 97.39% | 0.54% | NA | Africa | H3AfricaPhase1 |
| SPMP04_bin.113 | 2,183,430 | 99.94% | 1.01% | Singapore | Asia | SPMP |
| SPMP06_bin.101 | 2,257,568 | 97.93% | 0.23% | Singapore | Asia | SPMP |
| SPMP08_bin.19 | 2,017,613 | 97.88% | 0.23% | Singapore | Asia | SPMP |
| SPMP10_bin.36 | 2,321,047 | 98.27% | 2.36% | Singapore | Asia | SPMP |
| SPMP100_bin.8 | 2,224,038 | 98.69% | 0.46% | Singapore | Asia | SPMP |
| SPMP104_bin.53 | 2,200,646 | 98.56% | 0.46% | Singapore | Asia | SPMP |
| SPMP105_bin.17 | 2,416,290 | 97.24% | 1.63% | Singapore | Asia | SPMP |
| SPMP106_bin.109 | 2,214,388 | 98.62% | 0.15% | Singapore | Asia | SPMP |
| SPMP108_bin.2 | 2,300,577 | 98.6% | 0.69% | Singapore | Asia | SPMP |
| SPMP11_bin.12 | 2,171,584 | 99.19% | 1.09% | Singapore | Asia | SPMP |
| SPMP12_bin.43 | 2,180,053 | 99.08% | 2.07% | Singapore | Asia | SPMP |
| SPMP13_bin.5 | 2,223,161 | 96.97% | 0% | Singapore | Asia | SPMP |
| SPMP14_bin.16 | 2,083,536 | 98.1% | 0.31% | Singapore | Asia | SPMP |
| SPMP15_bin.5 | 2,268,471 | 98.16% | 0.23% | Singapore | Asia | SPMP |
| SPMP16_bin.97 | 2,374,357 | 99.01% | 1.47% | Singapore | Asia | SPMP |
| SPMP21_bin.5 | 2,123,787 | 96.4% | 0% | Singapore | Asia | SPMP |
| SPMP23_bin.30 | 2,131,558 | 95.24% | 2.71% | Singapore | Asia | SPMP |
| SPMP26_bin.7 | 2,336,683 | 96.26% | 0.69% | Singapore | Asia | SPMP |
| SPMP28_bin.133 | 2,189,973 | 98.99% | 0% | Singapore | Asia | SPMP |
| SPMP29_bin.81 | 1,990,062 | 97.08% | 0.23% | Singapore | Asia | SPMP |
| SPMP30_bin.7 | 2,216,196 | 99.08% | 0% | Singapore | Asia | SPMP |
| SPMP31_bin.10 | 2,174,587 | 98.16% | 0% | Singapore | Asia | SPMP |
| SPMP33_bin.79 | 2,195,409 | 98.47% | 1.38% | Singapore | Asia | SPMP |
| SPMP35_bin.67 | 2,235,261 | 96.58% | 0% | Singapore | Asia | SPMP |
| SPMP36_bin.109 | 2,145,700 | 97.68% | 0.23% | Singapore | Asia | SPMP |
| SPMP37_bin.31 | 2,340,292 | 100% | 0.15% | Singapore | Asia | SPMP |
| SPMP38_bin.116 | 2,170,327 | 98.68% | 0.92% | Singapore | Asia | SPMP |
| SPMP40_bin.13 | 2,235,442 | 98.92% | 0% | Singapore | Asia | SPMP |
| SPMP46_bin.6 | 2,323,086 | 99.54% | 0% | Singapore | Asia | SPMP |
| SPMP48_bin.129 | 2,226,391 | 97.58% | 1.84% | Singapore | Asia | SPMP |
| SPMP58_bin.1 | 2,267,406 | 99.39% | 0% | Singapore | Asia | SPMP |
| SPMP63_bin.56 | 2,032,860 | 95.03% | 1.38% | Singapore | Asia | SPMP |
| SPMP64_bin.8 | 2,204,384 | 94.44% | 0.32% | Singapore | Asia | SPMP |
| SPMP68_bin.11 | 2,188,593 | 97.68% | 0.12% | Singapore | Asia | SPMP |
| SPMP73_bin.55 | 2,202,611 | 97.47% | 0% | Singapore | Asia | SPMP |
| SPMP74_bin.11 | 2,021,906 | 90.45% | 2.33% | Singapore | Asia | SPMP |
| SPMP77_bin.14 | 2,206,313 | 99.12% | 0.15% | Singapore | Asia | SPMP |
| SPMP79_bin.4 | 2,360,392 | 97.79% | 0.81% | Singapore | Asia | SPMP |
| SPMP81_bin.93 | 2,384,082 | 96.18% | 3.43% | Singapore | Asia | SPMP |
| SPMP83_bin.30 | 2,324,820 | 94.16% | 2.92% | Singapore | Asia | SPMP |
| SPMP85_bin.3 | 2,200,251 | 97.72% | 0% | Singapore | Asia | SPMP |
| SPMP86_bin.30 | 2,447,874 | 99.05% | 1.04% | Singapore | Asia | SPMP |
| SPMP93_bin.6 | 2,075,381 | 98.1% | 0% | Singapore | Asia | SPMP |
| SPMP94_bin.52 | 2,281,042 | 95.26% | 2.65% | Singapore | Asia | SPMP |
| SPMP95_bin.56 | 2,201,672 | 96.27% | 0% | Singapore | Asia | SPMP |
| SPMP98_bin.70 | 2,150,318 | 99.22% | 0% | Singapore | Asia | SPMP |
| SPMP99_bin.67 | 2,256,870 | 99.42% | 1.21% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| C46.CMAG_1_CGC33 | CGCFAM_00526 | Yes | 3 | 1 | |
| C46.CMAG_1_CGC20 | CGCFAM_00583 | Yes | 10 | 2 | alpha-glucan/galactan |
| PUL0285_C46.CMAG_1_C1 | CGCFAM_00819 | Yes | 5 | 1 | beta-mannan |
| C46.CMAG_1_CGC3 | CGCFAM_00980 | Yes | 4 | 1 | |
| C46.CMAG_1_CGC11 | CGCFAM_01691 | Yes | 7 | 1 | |
| C46.CMAG_1_CGC13 | CGCFAM_01746 | Yes | 3 | 1 | |
| C46.CMAG_1_CGC2 | CGCFAM_01882 | Yes | 4 | 1 | |
| C46.CMAG_1_CGC23 | CGCFAM_01884 | Yes | 8 | 4 | |
| C46.CMAG_1_CGC15 | CGCFAM_02435 | Yes | 9 | 3 | |
| C46.CMAG_1_CGC25 | CGCFAM_02730 | Yes | 4 | 2 | |
| C46.CMAG_1_CGC30 | CGCFAM_02947 | Yes | 7 | 3 | xylan |
| C46.CMAG_1_CGC38 | CGCFAM_03490 | Yes | 5 | 1 | |
| PUL0295_C46.CMAG_1_C0 | CGCFAM_04142 | Yes | 7 | 5 | arabinogalactan |
| C46.CMAG_1_CGC21 | CGCFAM_04190 | Yes | 20 | 7 | arabinogalactan |
| PUL0029_C46.CMAG_1_C0 | CGCFAM_04190 | Yes | 20 | 7 | arabinogalactan |
| C46.CMAG_1_CGC14 | CGCFAM_04919 | Yes | 4 | 1 | |
| C46.CMAG_1_CGC22 | CGCFAM_05247 | Yes | 9 | 2 | |
| C46.CMAG_1_CGC12 | CGCFAM_07447 | Yes | 14 | 1 | |
| C46.CMAG_1_CGC10 | CGCFAM_07994 | Yes | 6 | 1 | |
| C46.CMAG_1_CGC28 | CGCFAM_07995 | Yes | 3 | 1 |
Top CAZyme Families