Cluster: C46.CMAG_1_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: C46.CMAG_1
- CGC Family ID: CGCFAM_02435
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C46_contig_1457 | C46_contig_1457_613 | 717930 | 720167 | + | GH77 |
| TF | C46_contig_1457 | C46_contig_1457_614 | 720300 | 721334 | + | LacI |
| CAZyme | C46_contig_1457 | C46_contig_1457_615 | 721494 | 723308 | + | GH13_30 |
| pfam | C46_contig_1457 | C46_contig_1457_616 | 723388 | 724440 | - | KARI_C | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored | KARI_N |
| pfam | C46_contig_1457 | C46_contig_1457_617 | 724869 | 725921 | - | KARI_C | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored | KARI_N |
| TC | C46_contig_1457 | C46_contig_1457_618 | 726118 | 727485 | - | 2.A.1.6.10 |
| TF | C46_contig_1457 | C46_contig_1457_619 | 728113 | 729156 | - | LacI |
| pfam | C46_contig_1457 | C46_contig_1457_620 | 729220 | 730857 | - | MFS_1 | MFS_2 |
| CAZyme | C46_contig_1457 | C46_contig_1457_621 | 731075 | 732601 | - | GH13_18 |
Gene ID: C46_contig_1457_613
Type: CAZyme
Location: 717930 - 720167 (+)
Type: CAZyme
Location: 717930 - 720167 (+)
Gene ID: C46_contig_1457_614
Type: TF
Location: 720300 - 721334 (+)
Type: TF
Location: 720300 - 721334 (+)
Gene ID: C46_contig_1457_615
Type: CAZyme
Location: 721494 - 723308 (+)
Type: CAZyme
Location: 721494 - 723308 (+)
Gene ID: C46_contig_1457_616
Type: pfam
Location: 723388 - 724440 (-)
Type: pfam
Location: 723388 - 724440 (-)
Gene ID: C46_contig_1457_617
Type: pfam
Location: 724869 - 725921 (-)
Type: pfam
Location: 724869 - 725921 (-)
Gene ID: C46_contig_1457_618
Type: TC
Location: 726118 - 727485 (-)
Type: TC
Location: 726118 - 727485 (-)
Gene ID: C46_contig_1457_619
Type: TF
Location: 728113 - 729156 (-)
Type: TF
Location: 728113 - 729156 (-)
Gene ID: C46_contig_1457_620
Type: pfam
Location: 729220 - 730857 (-)
Type: pfam
Location: 729220 - 730857 (-)
Gene ID: C46_contig_1457_621
Type: CAZyme
Location: 731075 - 732601 (-)
Type: CAZyme
Location: 731075 - 732601 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium longum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.