Cluster: C46.CMAG_1_CGC30
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: xylan
- Genome ID: C46.CMAG_1
- CGC Family ID: CGCFAM_02947
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C46_contig_1457 | C46_contig_1457_1192 | 1454552 | 1455865 | + | 3.A.1.1.21 |
| TC | C46_contig_1457 | C46_contig_1457_1193 | 1455959 | 1457011 | + | 3.A.1.1.25 |
| TC | C46_contig_1457 | C46_contig_1457_1194 | 1457008 | 1457904 | + | 3.A.1.1.25 |
| CAZyme | C46_contig_1457 | C46_contig_1457_1195 | 1458019 | 1459638 | + | CBM91 | GH43_11 |
| CAZyme | C46_contig_1457 | C46_contig_1457_1196 | 1459715 | 1461487 | + | GH43_12 |
| pfam | C46_contig_1457 | C46_contig_1457_1197 | 1461560 | 1462192 | + | Hexapep | Hexapep_2 | Hexapep_2 |
| CAZyme | C46_contig_1457 | C46_contig_1457_1198 | 1462256 | 1464235 | + | GH120 |
Gene ID: C46_contig_1457_1192
Type: TC
Location: 1454552 - 1455865 (+)
Type: TC
Location: 1454552 - 1455865 (+)
Gene ID: C46_contig_1457_1193
Type: TC
Location: 1455959 - 1457011 (+)
Type: TC
Location: 1455959 - 1457011 (+)
Gene ID: C46_contig_1457_1194
Type: TC
Location: 1457008 - 1457904 (+)
Type: TC
Location: 1457008 - 1457904 (+)
Gene ID: C46_contig_1457_1195
Type: CAZyme
Location: 1458019 - 1459638 (+)
Type: CAZyme
Location: 1458019 - 1459638 (+)
Gene ID: C46_contig_1457_1196
Type: CAZyme
Location: 1459715 - 1461487 (+)
Type: CAZyme
Location: 1459715 - 1461487 (+)
Gene ID: C46_contig_1457_1197
Type: pfam
Location: 1461560 - 1462192 (+)
Type: pfam
Location: 1461560 - 1462192 (+)
Gene ID: C46_contig_1457_1198
Type: CAZyme
Location: 1462256 - 1464235 (+)
Type: CAZyme
Location: 1462256 - 1464235 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium longum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C46_contig_1457_1196 | vegetarian > omnivore | 1.14926 | 0.01548 |