Cluster: PUL0029_C46.CMAG_1_C0
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 7
- Substrate: arabinogalactan
- Genome ID: C46.CMAG_1
- CGC Family ID: CGCFAM_04190
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TF | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_785 | 963950 | 964966 | - | LacI |
| TC | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_786 | 965349 | 966203 | + | 3.A.1.1.45 |
| TC | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_787 | 966203 | 967045 | + | 3.A.1.1.45 |
| TC | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_788 | 967104 | 967709 | + | 9.B.28.1.3 |
| CAZyme | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_789 | 968046 | 971243 | + | GH43_22 |
| CAZyme | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_790 | 971590 | 974883 | + | GH43_22 |
| CAZyme | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_791 | 975127 | 978867 | + | GH43_27 |
| CAZyme | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_792 | 979755 | 985757 | + | GH43_22 | GH43_26 |
| CAZyme | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_793 | 985884 | 990878 | + | GH43_22 | GH43_34 |
| TC | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_795 | 992587 | 994068 | - | 2.A.3.1.3 |
| TF | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_796 | 994291 | 994860 | - | HTH_11 |
| TC | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_797 | 995004 | 995705 | + | 3.A.1.122.8 |
| pfam | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_798 | 995770 | 999477 | + | FtsX | FtsX |
| TC | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_799 | 999665 | 1001188 | + | 2.A.3.1.20 |
| TF | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_800 | 1001546 | 1003024 | + | 0045030 |
| CAZyme | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_801 | 1003328 | 1007869 | + | GH30_5 |
| CAZyme | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_802 | 1008081 | 1011917 | + | GH43_24 |
| TF | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_805 | 1013115 | 1013636 | + | MarR |
| TC | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_806 | 1013823 | 1015694 | + | 3.A.1.135.6 |
| TC | PUL0029_C46.CMAG_1_C0 | C46_contig_1457_807 | 1015909 | 1017747 | + | 3.A.1.135.6 |
Gene ID: C46_contig_1457_785
Type: TF
Location: 963950 - 964966 (-)
Type: TF
Location: 963950 - 964966 (-)
Gene ID: C46_contig_1457_786
Type: TC
Location: 965349 - 966203 (+)
Type: TC
Location: 965349 - 966203 (+)
Gene ID: C46_contig_1457_787
Type: TC
Location: 966203 - 967045 (+)
Type: TC
Location: 966203 - 967045 (+)
Gene ID: C46_contig_1457_788
Type: TC
Location: 967104 - 967709 (+)
Type: TC
Location: 967104 - 967709 (+)
Gene ID: C46_contig_1457_789
Type: CAZyme
Location: 968046 - 971243 (+)
Type: CAZyme
Location: 968046 - 971243 (+)
Gene ID: C46_contig_1457_790
Type: CAZyme
Location: 971590 - 974883 (+)
Type: CAZyme
Location: 971590 - 974883 (+)
Gene ID: C46_contig_1457_791
Type: CAZyme
Location: 975127 - 978867 (+)
Type: CAZyme
Location: 975127 - 978867 (+)
Gene ID: C46_contig_1457_792
Type: CAZyme
Location: 979755 - 985757 (+)
Type: CAZyme
Location: 979755 - 985757 (+)
Gene ID: C46_contig_1457_793
Type: CAZyme
Location: 985884 - 990878 (+)
Type: CAZyme
Location: 985884 - 990878 (+)
Gene ID: C46_contig_1457_795
Type: TC
Location: 992587 - 994068 (-)
Type: TC
Location: 992587 - 994068 (-)
Gene ID: C46_contig_1457_796
Type: TF
Location: 994291 - 994860 (-)
Type: TF
Location: 994291 - 994860 (-)
Gene ID: C46_contig_1457_797
Type: TC
Location: 995004 - 995705 (+)
Type: TC
Location: 995004 - 995705 (+)
Gene ID: C46_contig_1457_798
Type: pfam
Location: 995770 - 999477 (+)
Type: pfam
Location: 995770 - 999477 (+)
Gene ID: C46_contig_1457_799
Type: TC
Location: 999665 - 1001188 (+)
Type: TC
Location: 999665 - 1001188 (+)
Gene ID: C46_contig_1457_800
Type: TF
Location: 1001546 - 1003024 (+)
Type: TF
Location: 1001546 - 1003024 (+)
Gene ID: C46_contig_1457_801
Type: CAZyme
Location: 1003328 - 1007869 (+)
Type: CAZyme
Location: 1003328 - 1007869 (+)
Gene ID: C46_contig_1457_802
Type: CAZyme
Location: 1008081 - 1011917 (+)
Type: CAZyme
Location: 1008081 - 1011917 (+)
Gene ID: C46_contig_1457_805
Type: TF
Location: 1013115 - 1013636 (+)
Type: TF
Location: 1013115 - 1013636 (+)
Gene ID: C46_contig_1457_806
Type: TC
Location: 1013823 - 1015694 (+)
Type: TC
Location: 1013823 - 1015694 (+)
Gene ID: C46_contig_1457_807
Type: TC
Location: 1015909 - 1017747 (+)
Type: TC
Location: 1015909 - 1017747 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium longum
Gene Composition
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