Genome Details
Selected Rep_genome_ID: AG400_49
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides gordonii
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG400_49 | 6,542,195 | 99.62% | 0.9% | NA | Africa | H3AfricaPhase2 |
| CGMR016059 | 5,790,856 | 96.54% | 0.38% | China | Asia | CGMR |
| CGMR052860 | 5,632,758 | 93.3% | 3.08% | China | Asia | CGMR |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| AG400_49_CGC108 | CGCFAM_00001 | Yes | 4 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC112 | CGCFAM_00001 | Yes | 3 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC39 | CGCFAM_00001 | Yes | 5 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC41 | CGCFAM_00001 | Yes | 4 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC44 | CGCFAM_00001 | Yes | 7 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC47 | CGCFAM_00001 | Yes | 4 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC48 | CGCFAM_00001 | Yes | 5 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC49 | CGCFAM_00001 | Yes | 5 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC52 | CGCFAM_00001 | Yes | 3 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC58 | CGCFAM_00001 | Yes | 5 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC88 | CGCFAM_00001 | Yes | 4 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC94 | CGCFAM_00001 | Yes | 4 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| AG400_49_CGC68 | CGCFAM_00003 | Yes | 7 | 3 | |
| AG400_49_CGC24 | CGCFAM_00006 | Yes | 10 | 7 | |
| AG400_49_CGC42 | CGCFAM_00007 | Yes | 12 | 5 | |
| AG400_49_CGC107 | CGCFAM_00017 | Yes | 5 | 2 | fructan |
| AG400_49_CGC70 | CGCFAM_00017 | Yes | 8 | 3 | fructan |
| AG400_49_CGC105 | CGCFAM_00023 | Yes | 4 | 1 | |
| AG400_49_CGC116 | CGCFAM_00023 | Yes | 3 | 1 | |
| AG400_49_CGC20 | CGCFAM_00023 | Yes | 7 | 4 | |
| AG400_49_CGC73 | CGCFAM_00025 | Yes | 4 | 2 | pectin/alpha-glucan |
| AG400_49_CGC21 | CGCFAM_00061 | Yes | 3 | 1 | |
| AG400_49_CGC62 | CGCFAM_00079 | Yes | 5 | 3 | pectin |
| AG400_49_CGC55 | CGCFAM_00082 | Yes | 5 | 1 | beta-mannan |
| AG400_49_CGC43 | CGCFAM_00083 | Yes | 3 | 1 | beta-glucan |
Top CAZyme Families