y
Basic Information | |
---|---|
Species | Citrus sinensis |
Cazyme ID | orange1.1g008842m |
Family | AA7 |
Protein Properties | Length: 552 Molecular Weight: 61207.6 Isoelectric Point: 6.2571 |
Chromosome | Chromosome/Scaffold: 00549 Start: 46698 End: 48353 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA7 | 71 | 537 | 0 |
NLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASN THGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQ HVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYN QDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSW GPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGI |
Full Sequence |
---|
Protein Sequence Length: 552 Download |
MANFLNNLFL LFMFIIIIII TPSQSTPTLN FISCLNRYNV NNFTLFPNIQ NDHSEEANYN 60 YYELLNFSIQ NLRFTDSSVP KPVAIILPES IDQLANSVLC CRNESMELRV RCGGHSYEGT 120 SSFSSDGASF VILDMSNLNK ISVDLESETA WVQGGATLGE TYSAISEASN THGFSAGSCP 180 TVGVGGHIGG GGFGLLSRKY GLAADNVVDA LLMDANGRLL NREAMGEDVF WAIRGGGGGV 240 WGIVYAWKIK LLQVPRVVSG FVLSRPGSKQ HVAKLVNKWQ HVAPNLTDDF YLSCFIGAGL 300 PETKSIGLSA TFKGFYLGPK HEALTILNNF FPELRVSEKD GKEMSWIESI LFFSGLSNGS 360 TISDLKKRYN QDKNYFKAKS DYVRTPISVT GIRTALEILD KEPKGYVIFD PYGGIMHKIG 420 SEEIAFPHRN GNLFTIQYIV AWYGEDNDKS NGYIDWIRAF YNAMTPFVSW GPRAAYINYM 480 DIDLGEMELI NSSFPSKDAV EIARVWGEKY FLKNYDRLVK AKTIIDPNNI FSNQQGIPPT 540 FSLGFKGKSS E* 600 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK11230 | PRK11230 | 0.002 | 82 | 258 | 190 | + glycolate oxidase subunit GlcD; Provisional | ||
TIGR00387 | glcD | 0.0007 | 85 | 301 | 233 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
pfam08031 | BBE | 9.0e-14 | 475 | 538 | 64 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
COG0277 | GlcD | 1.0e-19 | 82 | 539 | 481 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 6.0e-25 | 82 | 221 | 141 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI16966.1 | 0 | 1 | 549 | 277 | 776 | unnamed protein product [Vitis vinifera] |
EMBL | CBI16966.1 | 0 | 378 | 518 | 85 | 224 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264336.1 | 0 | 1 | 546 | 1 | 540 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002329230.1 | 0 | 19 | 542 | 5 | 528 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002533924.1 | 0 | 1 | 539 | 1 | 534 | d-lactate dehydrogenase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3fw9_A | 0 | 30 | 539 | 1 | 493 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine |
PDB | 4ec3_A | 0 | 30 | 549 | 7 | 509 | A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline |
PDB | 3gsy_A | 0 | 30 | 549 | 7 | 509 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine |
PDB | 3d2j_A | 0 | 30 | 549 | 26 | 528 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine |
PDB | 3d2h_A | 0 | 30 | 549 | 26 | 528 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine |