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Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a018986m |
Family | AA7 |
Protein Properties | Length: 500 Molecular Weight: 56139.9 Isoelectric Point: 8.8889 |
Chromosome | Chromosome/Scaffold: 83 Start: 386430 End: 387929 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 27 | 488 | 0 |
TFPEKPLLIFTPFYEHQIRLAIHCSKKLGVEIRLRSGGHDYEGLSSASEVTFMVVDLRNLRAVKIASNEKTAWVQAGATLGQLYHTLAQKSRTLAFTAGV CPTVGVGGHISGGGYGMMSRKHSLAADNIVDARVMNSDGQILNRRSMGEDLFWAIRGGGGTSFGIVLAFKVNLVTVPETLTVFNVTRTSEQNATQLVHRW QYIADKVDENLLLRLFLRSVTSPVTGNRTVIASFTTLYLGGVQDLLPLMKQQFPELGLVEKDCTEMSWIESVLFFAGLQNKPLDVLLETAPPSRQYFKGK SDYVQEPIPLDGLQGIWRFMHEEDEMGSRLELSPYGGVLNSFSESETPFPHRSGNIFIIEYGVYWHSSKGNNEEQGDQKHIKWMRRLYSYMATYVSKNPR AAYINYRDLDLGMNNNSAGNTTTCYEQARVWGMKYFKNNFQRLVRVKTKVDPTNFFRNEQSI |
Full Sequence |
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Protein Sequence Length: 500 Download |
TSHLIYTPNN SSYATLIQIE NQRPAATFPE KPLLIFTPFY EHQIRLAIHC SKKLGVEIRL 60 RSGGHDYEGL SSASEVTFMV VDLRNLRAVK IASNEKTAWV QAGATLGQLY HTLAQKSRTL 120 AFTAGVCPTV GVGGHISGGG YGMMSRKHSL AADNIVDARV MNSDGQILNR RSMGEDLFWA 180 IRGGGGTSFG IVLAFKVNLV TVPETLTVFN VTRTSEQNAT QLVHRWQYIA DKVDENLLLR 240 LFLRSVTSPV TGNRTVIASF TTLYLGGVQD LLPLMKQQFP ELGLVEKDCT EMSWIESVLF 300 FAGLQNKPLD VLLETAPPSR QYFKGKSDYV QEPIPLDGLQ GIWRFMHEED EMGSRLELSP 360 YGGVLNSFSE SETPFPHRSG NIFIIEYGVY WHSSKGNNEE QGDQKHIKWM RRLYSYMATY 420 VSKNPRAAYI NYRDLDLGMN NNSAGNTTTC YEQARVWGMK YFKNNFQRLV RVKTKVDPTN 480 FFRNEQSIPP YAAISVYSS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01678 | FAD_lactone_ox | 1.0e-5 | 25 | 229 | 207 | + sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1. | ||
pfam08031 | BBE | 2.0e-18 | 428 | 489 | 62 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 2.0e-21 | 32 | 169 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
COG0277 | GlcD | 6.0e-22 | 23 | 226 | 212 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002299021.1 | 0 | 2 | 493 | 46 | 532 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002299025.1 | 0 | 4 | 490 | 2 | 483 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002300557.1 | 0 | 2 | 490 | 44 | 527 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332196.1 | 0 | 2 | 493 | 37 | 526 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334045.1 | 0 | 2 | 493 | 44 | 530 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 4 | 490 | 24 | 512 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 5 | 490 | 26 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 5 | 490 | 26 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 4 | 490 | 23 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 4 | 490 | 23 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777438 | 495 | 2 | 489 | 0 |
GR020120 | 255 | 86 | 340 | 0 |
GR106174 | 254 | 241 | 493 | 0 |
GR118781 | 250 | 175 | 424 | 0 |
GR065174 | 253 | 221 | 473 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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