y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00037665m |
Family | AA7 |
Protein Properties | Length: 539 Molecular Weight: 58450.9 Isoelectric Point: 9.9256 |
Chromosome | Chromosome/Scaffold: 000185 Start: 38716 End: 40332 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 76 | 522 | 0 |
ATPTPVAIVAAADASHVQAAVRCGARHGVRVRPRSGGHDYEGLSYRSLSAARPFAIVDLAALRAVRVNAARRTAWVGSGATLGELYYAIANRSARLGFPG GVGPTVGLGGHLSGGGFGLLLRKHGLAADHVVDAVIVDAEGRLLDRAAMGEDLFWAIRGGGGGSFGVVLRWKLRLVRVPATVAVFAVHRPRNQSATALLA RWQRVAPALPRDVFLRVVLQNQDAQFQSLYLGTCAGLVATMAGRFPELGVTPRDCIEMMWIESVLYFAFYGTAKPRELLLDRGAGPERYFKAKSDYVSEP VPSHVWESAWSWFLRDGAGLLILDPYGGRMAGVSPSATPFPHRRELYNLQYYGFWFENGTEVSEKHVGWIRGLHREMEPYVSKNPRGAYVNYRDLDLGVN GDDDGGVGGYEKARAWGEMYFKANFERLAAVKAKVDPHDFFRNEQSI |
Full Sequence |
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Protein Sequence Length: 539 Download |
MAMVRRSFAL SLLAAFLAVL HRAASAAPAA PSPDTASFLR CLAADLPPQV VHTNASPSYA 60 SVLESSIKNL LFVTPATPTP VAIVAAADAS HVQAAVRCGA RHGVRVRPRS GGHDYEGLSY 120 RSLSAARPFA IVDLAALRAV RVNAARRTAW VGSGATLGEL YYAIANRSAR LGFPGGVGPT 180 VGLGGHLSGG GFGLLLRKHG LAADHVVDAV IVDAEGRLLD RAAMGEDLFW AIRGGGGGSF 240 GVVLRWKLRL VRVPATVAVF AVHRPRNQSA TALLARWQRV APALPRDVFL RVVLQNQDAQ 300 FQSLYLGTCA GLVATMAGRF PELGVTPRDC IEMMWIESVL YFAFYGTAKP RELLLDRGAG 360 PERYFKAKSD YVSEPVPSHV WESAWSWFLR DGAGLLILDP YGGRMAGVSP SATPFPHRRE 420 LYNLQYYGFW FENGTEVSEK HVGWIRGLHR EMEPYVSKNP RGAYVNYRDL DLGVNGDDDG 480 GVGGYEKARA WGEMYFKANF ERLAAVKAKV DPHDFFRNEQ SIPPLPSSRK GLSYKGNY* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam08031 | BBE | 2.0e-13 | 463 | 523 | 61 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD54128.1 | 0 | 10 | 529 | 12 | 530 | putative CPRD2 [Oryza sativa Japonica Group] |
GenBank | EAZ01286.1 | 0 | 1 | 527 | 1 | 531 | hypothetical protein OsI_23311 [Oryza sativa Indica Group] |
RefSeq | NP_001057827.1 | 0 | 1 | 527 | 1 | 534 | Os06g0548200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130124.1 | 0 | 3 | 513 | 1 | 520 | hypothetical protein LOC100191218 [Zea mays] |
RefSeq | XP_002438539.1 | 0 | 23 | 532 | 6 | 518 | hypothetical protein SORBIDRAFT_10g021670 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 37 | 525 | 12 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 37 | 525 | 12 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 38 | 525 | 11 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 38 | 525 | 11 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsh_A | 0 | 38 | 525 | 11 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |