y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30075.m001153 |
Family | AA7 |
Protein Properties | Length: 548 Molecular Weight: 61185.4 Isoelectric Point: 9.5303 |
Chromosome | Chromosome/Scaffold: 30075 Start: 193564 End: 195210 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 76 | 298 | 0 |
SVPKPEFIFTPLHETHVQAAVICSKQLGIHLRVRSGGHDYEGLSYASEIESPFIVVDLSKLRYVSVDIDDNSAWVQAGATVGEAYYRISEKSRTHGFPAG LCTSLGIGGHITGGAYGSMMRKYGLGADNVIDARIIDANGRVLDRQAMGEDLFWAIRGGGGASFGIILAWKLKLVPVPAIVTVFTVTKTLEQDATKILYR WQQVADKLDEDLFIRVIISTATI |
Full Sequence |
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Protein Sequence Length: 548 Download |
MLPSTSSSSI LPLLFLLLLS PSFAYSLPIF DSFIQCLKVN SEILIPFSTS FYTHDNSSFS 60 SVLQSSAQNL RYLLPSVPKP EFIFTPLHET HVQAAVICSK QLGIHLRVRS GGHDYEGLSY 120 ASEIESPFIV VDLSKLRYVS VDIDDNSAWV QAGATVGEAY YRISEKSRTH GFPAGLCTSL 180 GIGGHITGGA YGSMMRKYGL GADNVIDARI IDANGRVLDR QAMGEDLFWA IRGGGGASFG 240 IILAWKLKLV PVPAIVTVFT VTKTLEQDAT KILYRWQQVA DKLDEDLFIR VIISTATIAN 300 STARTVSNSY QGQFLGDANR LLHVMETSFP ELGLTRKDCI ETSWIKSVLY IAGYPSTTPP 360 EVLLQGKSLF KNYFKAKSDF VKEPIPETAL QGLWKRLLQE ESPLMIWNPY GGMMGKISES 420 AIPFPHRKGV LCKIQYLTGW QDGEKNAAKH MDWIRKLYNY MAPYVSMFPR TAYVNYRDLD 480 LGMNKNSSTS FIQASAWGSK YFKDNFNRLV QVKTKVDPDN FFRHEQSIPP LPASLRRKRR 540 GGRGGVKV 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam08031 | BBE | 4.0e-20 | 472 | 529 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
COG0277 | GlcD | 3.0e-20 | 92 | 276 | 195 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 6.0e-22 | 80 | 219 | 141 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 31 | 532 | 5 | 514 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 25 | 531 | 5 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 25 | 531 | 5 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 51 | 531 | 24 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 51 | 531 | 24 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |