y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10041290 |
Family | AA7 |
Protein Properties | Length: 453 Molecular Weight: 49717.1 Isoelectric Point: 8.5562 |
Chromosome | Chromosome/Scaffold: 280 Start: 1803362 End: 1805522 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 79 | 341 | 0 |
TTTPILILTPTDEAEIQAAVICCRNQHLEIRVRSGGHDYEGISYLSSTGRPYIIVDLFNLNSVQVDVHAESAWVQTGAQLGELYYAIAKKASHLAFPAGV CPTVGVGGHLGGGGFGTLVRKYGLAADNVVDAYIVDYRGRVMDRKAMGEDVFWAIRGGGAASFGVVLSWKVKLVRVPHTVTFFTVSRTVEEGATKLVHKW QRFAHDADDDLFIRVLILNVNKTTKVSFQSLFLGTVNKLIPLMNKTFPQLMLTAENCTEGSWA |
Full Sequence |
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Protein Sequence Length: 453 Download |
MEKQLLVLLL SSLALIISAS PTSPPRDKFI KCMTTTTTTK SNLGHPTTSP FPTIFTPDSS 60 LFDSTMDSKV QNMRYANSTT TPILILTPTD EAEIQAAVIC CRNQHLEIRV RSGGHDYEGI 120 SYLSSTGRPY IIVDLFNLNS VQVDVHAESA WVQTGAQLGE LYYAIAKKAS HLAFPAGVCP 180 TVGVGGHLGG GGFGTLVRKY GLAADNVVDA YIVDYRGRVM DRKAMGEDVF WAIRGGGAAS 240 FGVVLSWKVK LVRVPHTVTF FTVSRTVEEG ATKLVHKWQR FAHDADDDLF IRVLILNVNK 300 TTKVSFQSLF LGTVNKLIPL MNKTFPQLML TAENCTEGSW ADSALHFWGL NPKSPIEVLL 360 DKTQLYKAKF KAKSDFVKEP IPESGLRGIW KLLREEVEPV VVLEPLGGRM KGDSGISHSV 420 PTQERESVQR AVSCEVGRRR GRGREEALGM DE* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 4.0e-11 | 90 | 284 | 202 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 6.0e-16 | 90 | 219 | 131 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC41950.1 | 0 | 13 | 437 | 12 | 434 | FAD-linked oxidoreductase 1 [Glycine max] |
GenBank | ABC41951.1 | 0 | 1 | 444 | 1 | 442 | FAD-linked oxidoreductase 2 [Glycine max] |
EMBL | CAN81654.1 | 0 | 5 | 446 | 11 | 448 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002330615.1 | 0 | 19 | 410 | 25 | 414 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523167.1 | 0 | 15 | 417 | 12 | 415 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 25 | 411 | 3 | 397 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 54 | 408 | 26 | 376 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 54 | 408 | 26 | 376 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 54 | 410 | 24 | 378 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 54 | 410 | 24 | 378 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |