y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_025434m |
Family | AA7 |
Protein Properties | Length: 533 Molecular Weight: 60338.5 Isoelectric Point: 9.9483 |
Chromosome | Chromosome/Scaffold: 07478 Start: 752264 End: 753862 |
Description | FAD-binding Berberine family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 66 | 528 | 0 |
NRRFNTTNTPKPLVIVTPLSVSHVQDAVICSQKYGLQVRVRSGGHDYEGLSYVSPLPFVIIDLINLHSVSVDATKENAWVEAGANLGRVYYYIAKKSRTL GFPAGVCPTVGTGGHISGGGYGVLQRKYGLAADNVIDAKLIDVNGRILDRASMGEDLFWAIRGGGGNTFGIVVAWKLNLVPVPETVTVFTVEKTLEQNAI HILNRWQYVADKLHKDLFIRVIIERVNSTSQRGKPTVRAAFNSLFLGGVDRLLPMMQKSFPELGLVKEDCTEMRWIESVPYFAEFPRKTSLEILLNRTQP SVRFLKAKTDYVKKPMPKVALEGIWQRLSELEVESGQLIFTPYGGRMSEISESSIPFPHRAGNVYQIQHLVYWDKEGREETRRHINWIRDLYRFLTPFVS KNPRLAYVNYRDLDIGVNNMHGNTSYKQASKWGIKYYNMNFDRLVQVKTKVDPANFFRNEQSI |
Full Sequence |
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Protein Sequence Length: 533 Download |
MTSFYSMFPL LFFLLLSFSS ANSAHPHKDF LQCLRLQSRN SASISKVIYT SVNSSYLSVL 60 QFLIQNRRFN TTNTPKPLVI VTPLSVSHVQ DAVICSQKYG LQVRVRSGGH DYEGLSYVSP 120 LPFVIIDLIN LHSVSVDATK ENAWVEAGAN LGRVYYYIAK KSRTLGFPAG VCPTVGTGGH 180 ISGGGYGVLQ RKYGLAADNV IDAKLIDVNG RILDRASMGE DLFWAIRGGG GNTFGIVVAW 240 KLNLVPVPET VTVFTVEKTL EQNAIHILNR WQYVADKLHK DLFIRVIIER VNSTSQRGKP 300 TVRAAFNSLF LGGVDRLLPM MQKSFPELGL VKEDCTEMRW IESVPYFAEF PRKTSLEILL 360 NRTQPSVRFL KAKTDYVKKP MPKVALEGIW QRLSELEVES GQLIFTPYGG RMSEISESSI 420 PFPHRAGNVY QIQHLVYWDK EGREETRRHI NWIRDLYRFL TPFVSKNPRL AYVNYRDLDI 480 GVNNMHGNTS YKQASKWGIK YYNMNFDRLV QVKTKVDPAN FFRNEQSIPP LS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02805 | PLN02805 | 0.0004 | 65 | 244 | 187 | + D-lactate dehydrogenase [cytochrome] | ||
COG0277 | GlcD | 8.0e-16 | 77 | 244 | 175 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 1.0e-16 | 471 | 529 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 1.0e-22 | 77 | 214 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002299020.1 | 0 | 23 | 532 | 24 | 531 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002299022.1 | 0 | 23 | 532 | 17 | 524 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002300557.1 | 0 | 23 | 532 | 24 | 529 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332196.1 | 0 | 23 | 532 | 17 | 525 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334045.1 | 0 | 23 | 532 | 24 | 529 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 24 | 531 | 1 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 27 | 531 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 27 | 531 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 28 | 531 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 28 | 531 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |